Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4389 ATGGAGATAACCTTGTTAAAGGTGCTCGTTGAGGGCTTGTCCTTGGTTTTGCATTTACCATTTTCTGGAAACGTGAAATCCGAACTTGTCTTGAAACGTTACAAAAATGCAGAGGAGATACTTGAGTTGTTGAAGCCAGTAATTGATGCAATTGCAAATTCTGATATAGCTTCTGATGAAGTACTTTGGAGTATATTTGAAGAACTGCATCAAGCTGTTGAGGAATTGACCGAGCTATTTGAGAGCTGGCAGCTATTATCTAGCAAAGTTTGCATTGTTATGCAAGTTGAATCCTTGATATCTAAGATCCAGACTTTGGGACTCAATGTTTTTGAGCAGCTGAAGGTTTCTCATCAATGCCTACCTGATGAGTTGAGTTCTGAAATATCATTAGTCATTAAGGACGCTATTAGGGAACAAGTGAAAGGTGAAGAGCCTAGTTCAAAGGTCCTGGCCAAAATTTCTGAGAACCTGGGCTTGAGGTCTAATCAAGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAGTTGAAGGAGAATGCTGAACAAATTGAAGATACTGCAGAAGCTGAATATATTGACCAGATAATTGCTCTTGTAACTCGAATGCACGAGCGTCTCGTCACGCTAAAGGAAGCTCAGAGGTCCAGCCCCATACTAGTACCTACTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCAGTGATTGTGGCATCAGGCCAAACTTATGAAAGATCTTTCATTAAGAGCTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACGCGTCAGACTCTGTCTCACACCAACCTAATACCAAACTACACTGTAAAGGCACTAATTGCAAACTGGTGTGAATTGAACAATGTCAAGCCAGTTGATCCTATTAAGTCCTCAAACTTAAATCAAGAATCTTCCCTTCATGGATTTATGGATTCTGGTCCAACCCAGACTGATAAGAACTTACCTTGTAGTGAAATCCACCAAGAGGGATCATCACCATTGCATCCCCGTTCAATTTCAGAAGGTTCCTTAAGTGGAATGATTCATGGGCAGTGTTTGGATATTTCTAGAATATCACCATCAGGTTCTGATGACTTGTCTGCTAGCTCAGATGAAAGGAGTGAGGATTTAGTTAGCCAACACTCAATGTCACCATCTAGAAAGGAATCTTCCAATGCTTTTAGCTCGGAACAGTCTCAAACCCATGCTAGAATTGCCTCTGATTCCAGTGCACCTTCTAACAATTCAGGCGACAGTAGAGATGCTTCTGGGGAGGTAAATCCAAGGCCAGATAATGCTGGTGCTACTACCATGAATGCTTCACAAAGAGAACCTGAGTTCTCACCTCAATTGGTAGGTGCAAGGCCTCGAAGCCAAGGTTTATTGCAACGACCATTAGAGAGGTTTAATCCTAGGATGActtctactactactacttctGTTGAAACTAGTGGTATTGAGACTCGGGTTCGGAATTTAGTGGAAGACTTAAAAAGCTCTTCGCTTGATACTCAGAGAGAGGCAACAGCAGAATTGCGCCTTCTTGCCAAGCACAATATGGATAATCGAATTGTGATTGGAAACTGTGGAGTTATTAGCTTATTAGTTGATCTAGTCCAATCCACTGATGCAAGAATCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCAATCAATGATAATAACAAAGCTGCAATTGCAAATGCTGGAGCAATTGATAATCTGATTCATGTCCTTGAGACAGGAAGTCCTGAAGCCAAGGAGAATTCAGCTGCCACGCTTTACAGCTTGTCAGTGATGGAAGAAAACAAGATCAAGATAGGGAGATCCGGGGCCATTGGTCCACTAGTTGATTTATTAGCAAATGGAACTCCTAGGGGGAAGAAAGATGCTGCAACTGCTTTGTTTAATCTCTCAATATTTCACGAAAACAAGGGCCGGATTGTGGATGCTGGCGCTGTGAAGCATCTTGTGGAGTTAATGGATCCAGCAGCTGGAATGGTTGACAAGGCAGTGGCTGTTTTAGCAAATCTTGCTACAATTCAAGAAGGAAGAGTATCAATTGGTCAAGAAGGTGGGATTCCTCTTCTTGTCGAGGTCGTCGAATTGGGCTCTGCCAGAGGAAAGGAGAATGCAGCAGCTGCTCTTCTTCATCTTTGCTCAACCAGTCCTAAGTTTTTAAACATGGTGCTCCAAGAAGGAGCTGTCCCTCCATTAGTAGCTTTGTCACAGTCTGGAACCCCAAGGGCCAGAGAAAAGGCTCAAGCTCTGCTTAACCAATTTAGAAGTCAAAGACATGGTAATGCTGGGAGGGGCTGA 2331 0.4243 MEITLLKVLVEGLSLVLHLPFSGNVKSELVLKRYKNAEEILELLKPVIDAIANSDIASDEVLWSIFEELHQAVEELTELFESWQLLSSKVCIVMQVESLISKIQTLGLNVFEQLKVSHQCLPDELSSEISLVIKDAIREQVKGEEPSSKVLAKISENLGLRSNQEVLIEAVALEKLKENAEQIEDTAEAEYIDQIIALVTRMHERLVTLKEAQRSSPILVPTDFCCPLSLELMTDPVIVASGQTYERSFIKSWIDLGLTVCPKTRQTLSHTNLIPNYTVKALIANWCELNNVKPVDPIKSSNLNQESSLHGFMDSGPTQTDKNLPCSEIHQEGSSPLHPRSISEGSLSGMIHGQCLDISRISPSGSDDLSASSDERSEDLVSQHSMSPSRKESSNAFSSEQSQTHARIASDSSAPSNNSGDSRDASGEVNPRPDNAGATTMNASQREPEFSPQLVGARPRSQGLLQRPLERFNPRMTSTTTTSVETSGIETRVRNLVEDLKSSSLDTQREATAELRLLAKHNMDNRIVIGNCGVISLLVDLVQSTDARIQENAVTALLNLSINDNNKAAIANAGAIDNLIHVLETGSPEAKENSAATLYSLSVMEENKIKIGRSGAIGPLVDLLANGTPRGKKDAATALFNLSIFHENKGRIVDAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRVSIGQEGGIPLLVEVVELGSARGKENAAAALLHLCSTSPKFLNMVLQEGAVPPLVALSQSGTPRAREKAQALLNQFRSQRHGNAGRG 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4389 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 297 IPR013083 -
Sto5g4389 776 MobiDBLite consensus disorder prediction 306 342 - -
Sto5g4389 776 MobiDBLite consensus disorder prediction 382 425 - -
Sto5g4389 776 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Sto5g4389 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 615 657 IPR000225 GO:0005515
Sto5g4389 776 MobiDBLite consensus disorder prediction 433 449 - -
Sto5g4389 776 SMART arm_5 685 725 IPR000225 GO:0005515
Sto5g4389 776 SMART arm_5 604 644 IPR000225 GO:0005515
Sto5g4389 776 SMART arm_5 522 562 IPR000225 GO:0005515
Sto5g4389 776 SMART arm_5 563 603 IPR000225 GO:0005515
Sto5g4389 776 SMART arm_5 645 684 IPR000225 GO:0005515
Sto5g4389 776 PANTHER U BOX DOMAIN-CONTAINING 468 772 - -
Sto5g4389 776 PANTHER U BOX DOMAIN-CONTAINING 22 324 - -
Sto5g4389 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 575 IPR000225 GO:0005515
Sto5g4389 776 Coils Coil 163 193 - -
Sto5g4389 776 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Sto5g4389 776 Pfam U-box domain 220 290 IPR003613 GO:0004842|GO:0016567
Sto5g4389 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 656 697 IPR000225 GO:0005515
Sto5g4389 776 Gene3D - 484 771 IPR011989 -
Sto5g4389 776 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 324 - -
Sto5g4389 776 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 468 772 - -
Sto5g4389 776 MobiDBLite consensus disorder prediction 358 467 - -
Sto5g4389 776 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 574 616 IPR000225 GO:0005515
Sto5g4389 776 SUPERFAMILY RING/U-box 217 297 - -
Sto5g4389 776 MobiDBLite consensus disorder prediction 306 346 - -
Sto5g4389 776 CDD RING-Ubox_PUB 224 266 IPR045210 -
Sto5g4389 776 SUPERFAMILY ARM repeat 493 765 IPR016024 -
Sto5g4389 776 Pfam Armadillo/beta-catenin-like repeat 606 643 IPR000225 GO:0005515
Sto5g4389 776 Pfam Armadillo/beta-catenin-like repeat 524 561 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4389 Sto-Chr5 52470189 52473289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4389 180 776 U-box Gene Family AT2G23140 61.215 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4389 - - gmx:100811250 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2268 9 26089002 26092451 Sto5g4389 5 52470189 52473289 CCT