Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4355 ATGCGTGCTTTGAAGCTCACTGAACGTTTCAAGAGCACACAGGagaCGAGTAGTACAAGCAAAACCTCAAAGTCTGCTAAGCCTACCAGATATCGAATCCAACAGTTTGTGTCAAAACCCAAATCCAGAATCAACATCACAATCtcagaaattgaaaagaattttCCTTTTCCATTACCTTCTTCCGACATCCTCGAACCCTCCATTGACCCTTACCTTAAACCCATCAATCTCGTAGAGACATTAGCGGACCTCTATTCCCGCCTCGAAAACTGCCCACAATCCCACAAAACATCGCTCTGCATCGAGCAATTCTCGCTCCTTCGCAGCCTCGGAGACCAGAAGCTACTCCGTCGGTGTCTCCGCACCGCCCGACAGCACGCCGAGGATGTCCCTTCGAAGGTTGTTCTCTCGGCGTGGCTGAGATTCGAGAGGAGGGAGGATGAGTTCGTGGGTGTGTCTTCAATGGACTGTAATGGGTACATCCTCGAATGCCCAAAGTCCAATTTAGTATCTGGGTTTTCTCCCTGTTCGGTCATTAGTCACTGCCAGTGTCCCCAACATCCAAAACAGGAAATTCCGACCACATCCGAGGAAAACAAGAGTTTACCAGAAGAGGAAAGTGATGTTTCGTTTTGTATTGGCGACGAGGAAATTGAGTGTGTTCGTTACAGGATCGCAGCACTATCAGAGCCATTCAAGGCTATGTTGTATGGTAGTTTTGCTGAGTCACAATTGAGCAAGATCGAGTTTTCGCGAAATGGGATATGTCCAAAGGCTATGAGGGCAGTGGAATTGTACAGCAGGACGAAAAGATTGGATCTTTTCTGTGCCAAGACAGTTTTGGAGGTTCTTTCATTTGCTAATAGGTTCTGTTGTGAGGGGATGAAATCTGATTGTGATGCACATTTGGCCTCAATTGTTGGAAATGTTGAAGATGCATTAGTACTCATTGACTATGGAATAGAAGAGCGAGCGAGCCTTCTTGTAGGGTCATGCTTACAAGTGTTGCTGAGGGAGTTGCCGAATTCGTTGTACAATTCGAAAGTGATCAAAATCTTGTCTAGTCCTGAGGCGAAGGAGAGTTTGGCCATGGTTGGGTATGCTTCTTTCTTGTTGTACTATTTCTTAAGCCAAGTAGCTATGGAAGAAAGCATGGTATCCAAAACAACATTGATGTTACTAGAAAGATTAGGAGAGTGTGCTTCTGAAAGATGGCAGAAGGCACTTGCGTTTCATCAGTTGGGTTGTGTGTTGCTCGAGAGGAAAGAATATAAGGACTCTCAGCGATATTTCGAAGCAGCAGCCGAGGCGGGTCATGTTTATTCTATGGCGGGTGTAGCCAGAACGAAGCACAAGCAAGGTCAACCATATTCGGCCTATAAGTTAATCAGTTCTATCATATTTGAGTATAAACCAGCTGGGTGGATGTATCAGGAGAGGGCTTTGTATAATATTGGAAGAGAAAAGAGCTTTGATTTAGAATTTGCGACTCAATTAGATCCTTCGCTTTCGTTTCCATACAAGTATAGAGCTCTGGCTAAGGTGGAGGAAAAGCAGATAAAGGAAGGAATATCAGAACTAGATAGGATTATAGGGTTCAAGCTTTCCCCAGATTGTCTTGAATTGAGGGCTTGGTTGTTTATTGCCCTTGAGGATTTCAAAAGTGCGGCGAGAGATGTTCGGGCGTTGTTAACTTTGGAACCGAATTATTTAACATCACATGGGAAGATCAAAGGGGAATACTTGGTTCAGCTTCTTAGTCATAGGATTCAGCTAAAGAGTCAGGCTGATTGCTGGATGCAACTATATGAACAATGGTCTTCTGTTGATGACATTGGTTCTTTGGCTATTATACATCAAATGCTGGAAAATGAACCCGGAAAGAGCCTCTTAGAGTTTCGTCAGTCGCTACTACTTTTGAGGTTGAATTGTCAAAAGGCCGCAATGCGCAGTCTACGTTTGGCCAGAAACCATTCTAGCTCTATGCAAGAGAGGCTAATTTATGAAGGATGGATTCTCTATGATACTGGGTATCGCGAAGAAGCGCTGGCGAAAGCTGAGAGGTCGATTTCAATTCAGAGATCATTCGAAGCCTATTTTCTAAAAGCATATGTATTGGCAGATGCAAGCCTTGATGCTGAATCTTCTTCTTATGTCATCCAACTTCTGGAAGATGCTCTCAAGTGTCCTTCGGATGGACTTCGCAAAGGACAAGCATTGAATAATTTGGGGAGTATTTATGTGGATTGTGGTAAACTAGATCTTGCAAAAGAATGTTACACAAATGCCCTTGCAATTAGGCACACACGAGCTCACCAAGGTCTAGCGCGCGTTTATCATCAGAAAAATCAACGAAAATCCGCATACGACGAAATGACCAAGCTAATTGAGAAAGCAGAGAACAATGCTTCGGCATATGAGAAGCGATCGGAATACTGTGACCGTGAGATGGCGAAGGCTGATCTTGACACAGCAACACAACTGGATCCTTTAAGGACATATCCCTACAGATATAGGGCTGCAGTGATGATGGATGAGCAAAAAGAAACTGAAGCTGTGGAGGAACTCACCAAGGCCATAAACTTCAAGCCTGACCTGCAAATGCTTCATCTAAGAGCAGCTTTTTACGAGTCGATGGGCGACATGTCATCGGCTCTTCGAGATTGTCAAGCGGCTCTTTGCTTAGACCCAAACCATACAGACACAATGAATCTGTATAGAAGGACACAAAAGTTGAGCATGTAA 2748 0.4392 MRALKLTERFKSTQETSSTSKTSKSAKPTRYRIQQFVSKPKSRINITISEIEKNFPFPLPSSDILEPSIDPYLKPINLVETLADLYSRLENCPQSHKTSLCIEQFSLLRSLGDQKLLRRCLRTARQHAEDVPSKVVLSAWLRFERREDEFVGVSSMDCNGYILECPKSNLVSGFSPCSVISHCQCPQHPKQEIPTTSEENKSLPEEESDVSFCIGDEEIECVRYRIAALSEPFKAMLYGSFAESQLSKIEFSRNGICPKAMRAVELYSRTKRLDLFCAKTVLEVLSFANRFCCEGMKSDCDAHLASIVGNVEDALVLIDYGIEERASLLVGSCLQVLLRELPNSLYNSKVIKILSSPEAKESLAMVGYASFLLYYFLSQVAMEESMVSKTTLMLLERLGECASERWQKALAFHQLGCVLLERKEYKDSQRYFEAAAEAGHVYSMAGVARTKHKQGQPYSAYKLISSIIFEYKPAGWMYQERALYNIGREKSFDLEFATQLDPSLSFPYKYRALAKVEEKQIKEGISELDRIIGFKLSPDCLELRAWLFIALEDFKSAARDVRALLTLEPNYLTSHGKIKGEYLVQLLSHRIQLKSQADCWMQLYEQWSSVDDIGSLAIIHQMLENEPGKSLLEFRQSLLLLRLNCQKAAMRSLRLARNHSSSMQERLIYEGWILYDTGYREEALAKAERSISIQRSFEAYFLKAYVLADASLDAESSSYVIQLLEDALKCPSDGLRKGQALNNLGSIYVDCGKLDLAKECYTNALAIRHTRAHQGLARVYHQKNQRKSAYDEMTKLIEKAENNASAYEKRSEYCDREMAKADLDTATQLDPLRTYPYRYRAAVMMDEQKETEAVEELTKAINFKPDLQMLHLRAAFYESMGDMSSALRDCQAALCLDPNHTDTMNLYRRTQKLSM 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4355 915 PANTHER ETO1-LIKE PROTEIN 2 1 913 - -
Sto5g4355 915 SUPERFAMILY POZ domain 205 304 IPR011333 -
Sto5g4355 915 Coils Coil 783 817 - -
Sto5g4355 915 SUPERFAMILY TPR-like 721 907 IPR011990 GO:0005515
Sto5g4355 915 Pfam BTB/POZ domain 205 304 IPR000210 GO:0005515
Sto5g4355 915 Gene3D Tetratricopeptide repeat domain 635 801 IPR011990 GO:0005515
Sto5g4355 915 ProSiteProfiles TPR repeat profile. 738 771 IPR019734 GO:0005515
Sto5g4355 915 Gene3D Potassium Channel Kv1.1; Chain A 203 345 IPR011333 -
Sto5g4355 915 Gene3D Tetratricopeptide repeat domain 814 914 IPR011990 GO:0005515
Sto5g4355 915 Pfam Tetratricopeptide repeat 740 770 IPR019734 GO:0005515
Sto5g4355 915 Gene3D Tetratricopeptide repeat domain 394 579 IPR011990 GO:0005515
Sto5g4355 915 SUPERFAMILY TPR-like 615 767 IPR011990 GO:0005515
Sto5g4355 915 SUPERFAMILY TPR-like 403 574 IPR011990 GO:0005515
Sto5g4355 915 SMART tpr_5 538 571 IPR019734 GO:0005515
Sto5g4355 915 SMART tpr_5 867 900 IPR019734 GO:0005515
Sto5g4355 915 SMART tpr_5 738 771 IPR019734 GO:0005515
Sto5g4355 915 SMART tpr_5 409 442 IPR019734 GO:0005515
Sto5g4355 915 MobiDBLite consensus disorder prediction 10 29 - -
Sto5g4355 915 SMART BTB_4 208 308 IPR000210 GO:0005515
Sto5g4355 915 ProSiteProfiles TPR repeat profile. 867 900 IPR019734 GO:0005515
Sto5g4355 915 MobiDBLite consensus disorder prediction 1 29 - -
Sto5g4355 915 PANTHER ETO1-RELATED 1 913 IPR044631 GO:0010105
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4355 Sto-Chr5 52213432 52218159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4355 739 911 Glycosyltransferase AT3G04240 28.261 1.35e-10 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sto5g4355 BTB 4.5e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4355 - - gmx:100790527 1426.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4355 5 52213432 52218159 Sto5g4355 5 52213432 52218159 ECH