Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4346 ATGCAGATTTCAAACAAATATGGGTTGATATATGTTATCACAAAGCTAGGACTTCTATTTGTCTATGATCTGGAGACTGCTAGTGCAGTTTATAGAAACCGAATCAGTCCTGATCCTATATTTTTGACAGCAGAAGCATCTTCTTTAGGGGGGTTTTATGCCATTAATAGACGTGGCCAAGTGTTGCTTGCCACTGTAAATGAGGCAACCATTGTGCCTTTTGTCAGTGGCCAGTTAAATAATCTGGAACTTGCTATTAATCTTGCTAAAAGAGGAAATCTTCCTGGTGCAGAAGACCTGGTTGTTCAGCGGTTTCAAGAATTATTTTCTCAGACCAAATATAAGGAAGCTGCAGAGCTTGCTGCAGAAGCTCCACAAGGCATACTTCGTACTCCGAGCACTGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCTGGGCAAACGCCACCATTGTTGCAGTATTTTGGGACTTTGTTAACCAGGGGAAAACTCAATTCTTTTGAGTCATTAGAACTGTCACGGCTTGTGGTAAATCAGAATAAGAAGAATCTTCTGGAAAATTGGTTAGCTGAGGACAAACTTGAATGTAGTGAGGAGCTTGGAGACCTTGTAAAGACGGTGGATAATGACCTTGcattgaaaatatatatcaaagcCAGAGCAACGCCAAAAGTTGTGGCAGCTTTTGCTGAGAGGAAAGAATTTGATAAGATTCTAATATATTCACAACAGGTTGGATACACGCCTGATTACATGTTTCTTCTGCAAACAATTTTGAGGGCAGACCCCCAGGGTGCGGTTAATTTTGCTTTGATGATGTCTCAAATGGAAGGAGGTTGCCCAGTTGACTATAACACAATAACAGATCTCTTTCTTCAGAGGAATTTGATCCGGGAGGCAACAGCTTTTTTGTTGGATGTGCTGAAGCCAAATCTACCAGAACAAGCACATCTTCAAACAAAGgTGCTGGAAATAAACCTTGTGACCTTTCCAAATGTTGCTGATGCTATATTGGCCAATGGCATGTTTAGCCATTATGACCGTCCACGTATTGCACAACTATGTGAAAAGGCGGGACTTTTCATACGGGCTCTTCAGCATTATAGTGAATTGCCTGACATTAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGGCACTGGTTGAGTTCTTTGGAACTCTGTCCAGAGAATGGGCTCTTGAATGCATGAAAGACCTCTTACTGGTTAACCTCAGGGGCAATCTTCAAATAATTGTTCAGGCACAATATTCTGAGCAGCTGGGGGTTGACGCATGCATGAAGCTCTTTGGGCAATTCAAGTCCTATGAAGGACTATACTTTTTCTTGGGTTCATACTTAAGCTCCagTGAGGATCCTGATCTTCACTTCAAGTACATTGAAGCAGCTGCTAAAACTGGACAACTTAAGGAGGTAGAGCGTGTGACTCGGGAATCAAACTTCTATGATCCTGAGAAGACAAAGAATTTTCTCATGGAGGCCAAGCTTCCAGATGCTCGTCCGTTGATTAATGTGTGTGATCGTTTTGGCTTTGTTCCAGATCTCACCCATTTTCTCTATATCAACAACATGCTTCGCTATATTGAAGGTTATGTTCAAAAGGTGAATCCAGGAAATGCTCCTCTAGTTGTGGGGCAGTTGTTAGATGATGAATGCCCTGAAGATTTCATTAAAGGTCTTATTCTTTCAGTTCGTTCTCTTCTGCCAGTTGAGCCTTTGGTTGAGGAATGTGAGAAGAGGAATCGTCTCCGCTTGCTGACACAGTTCCTTGAGCATCTTGTGAGTGAAGGAAGTCAGGATGTACATGTGCATAACGCTCTGGGTAAAATTATCATTGACAGCAACAATGATCCAGAGCATTTTCTCACGACCAATCCATACTATGATTCTCGTGTTGTTGGTAAATATTGTGAGAAGCGGGATCCTACTCTTGCTGTTGTTGCTTACCGAAGAGGGCTATGTGATGATGAACTTGTTAatgttacaaataaaaattcCTTGTTCAAACTTCAAGCCAGATATGTTGTGGAAAGAATGGATGGTGACCTGTGGGACAAAGTTCTTAATCCTGAGAATGAGTATAGAAGGCAGTTGATTGATCAAGTGGTGTCTACTGCGTTGCCTGAAAGCAAGAGTCCTGAGCAAGTTTCAGCTGCAGTAAAAGCTTTCATGACTGCTGATCTTCCTCACGAGTTGATTGAGCTTCTTGAAAAGATTGTGCTGCAGAATTCTGCTTTTAGTGGAAACTTTAATCTGCAAAATTTGCTGATCCTTACTGCAATCAAGGCAGATTCTTCCAGAGTTATGGATTACATTAACAGGCTGGACAACTTTGATGGACCTGCAATAGGAGATGTGGCAGTGGAAGCAAAGCTATATGAGGAGGCATTTTTCATCTTcaagaaatttaatttgaatgttCAGGCTGTTAATGTTCTGCTCGATAACCTTCGAAGCATTGATCGAGCTGTAGAGTTTGCTTTCCGGGTTGAAGAAGATGCTGTGTGGACCCAGGTGGCTAAGGCACAGCTAAGAGAAGGATTAGTGAGTGATGCAATTGAATCATTCATTCGTGCTGATGATGCCACTCACTTTTTAGAGGTTATAAAGGCAGCTGAAGATGGAAATGTGTACCATGATCTGGTTAGGTACCTTCTGATGGTTAGGCAGAAGAACAGAGAGCCCAAGGTGGACAGTGAGCTCATTTATGCATATGCAAAAACTGATTGTCTTGCAGAAATTGAAGAGTTTATTCTGATGCCAAATGTTGCTAATTTACCCAATGTTGGAGACCGTTTGTATGATGAGGCCTTGTATGAAGCAGCAAAGAtaatttttgcttttatttcTAACTGGGCAAAGCTAGCAGTCACTCTGGTGAAGCTTCAACAGTTCCAAGGTGCTGTTGATGCAGCCAGGAAAGCCAATAGCTCAAAAACATGGAAGGAAGTTTGTTTTGCTTGTGTTGATGCTGAGGAATTCCGCTTGGCTCAGATTTGTGGTCTCAATGTCATCATTCAGgtgGATGATTTGGAAGAGGTTAGTGAGTTCTATCAGAATAGAGGATGCTTTAATGAACTCATCTCTCTAATGGAGAGTGGGCTTGGACTAGATCGAGCACACATGGGCATTTTCACTGAGTTGGGAGTTCTATATGCAAGATATCGTCCTGAGAAGCTAATGGAACACATCAAACTGTTTGCAACTCGTCTTAACATTCCCAAGCTGATTCGGGCCTGTGATGAACAGCAGCATTGGATGGAACTCACATACCTGCATATCCAATATGATGAGTTTGACAATGCGGCAGCAACTGTAATGAATCACTCTCCAGAAGCATGGGACCACATGCAATTCAAAGATATTATAGTAAAAGTTGCAAGTGTAGAGCTCTACTATAAGGCTGTTCACTTCTACTTGCAAGAACATCCTGATCTTATAAATGATCTTCTTAATGTGCTAGCCCTTCGTGTTGACCATACCCGTGTAGTGGATATATTGAGAAAGGCTGGCCATATCCGATTAGTGAAGCCATACTTGGTGGCAGTTCAAAGCAACAATGTTTCTGCTGTTAATGAAGCTTTGAATGAAATTtatgttgaggaagaggactaTGACAGACTTCGTGAATCCACAGATCTACATGACAATTTCGACCAGATAGGTCTTGCACAGAAGGTACATccatttcttttatcttttcgtGGTAAAAATGACAAGTTTGAATTATTGTTGACTGGCCTTGATAAAACTTATGAGCAGATTGAGAAGCATGAGCTTCTTGAGATGAGACGTGTTGCAGCTTATATTTATAAGAAAGCAGGAAGATGGAAGCAGTCCATTGCTTTGTCAAAGAAAGATAATCATTACAAGGATTGTATGGAAACATGCTCTCAATCTGGTGACCGTGAACTTTCAGAGGAGTTGCTGATCTACTTTATTGAGCAGGGAAAGAAAGAGTGTTTTGCATCATGCCTCTTTGTTTGTTATGATATTATTCGGCCAGATGTTGCTCTTGAGCTGGCATGGATGAACAACATGCTTGATTTCTCTTTCCCATATCTCTTAcagTTTATCCGAGAGTACACGGGTAAGGTAGATGAGCTTATCAAGGACAGAATtgaagcacaaaaagaggagaaagccaaagaaaaggaagagaaggatgTTATTGCTCAGCAGAATATGTATGCCCAGTTGCTTCCACTTGCTTTGCCTGCACCACCAGGAATGGGTGGAGGTTATGgtgcaccaccaccaccacctcctcATATGGGTGGAATGGGGATGCCACCAATGCCACCTTTTGGCATGCCTTCCATGGGTTCCTACTAA 4359 0.4017 MQISNKYGLIYVITKLGLLFVYDLETASAVYRNRISPDPIFLTAEASSLGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLELAINLAKRGNLPGAEDLVVQRFQELFSQTKYKEAAELAAEAPQGILRTPSTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNSFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERKEFDKILIYSQQVGYTPDYMFLLQTILRADPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEQAHLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFIRALQHYSELPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQAQYSEQLGVDACMKLFGQFKSYEGLYFFLGSYLSSSEDPDLHFKYIEAAAKTGQLKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHFLYINNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNDPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGLCDDELVNVTNKNSLFKLQARYVVERMDGDLWDKVLNPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADSSRVMDYINRLDNFDGPAIGDVAVEAKLYEEAFFIFKKFNLNVQAVNVLLDNLRSIDRAVEFAFRVEEDAVWTQVAKAQLREGLVSDAIESFIRADDATHFLEVIKAAEDGNVYHDLVRYLLMVRQKNREPKVDSELIYAYAKTDCLAEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDLEEVSEFYQNRGCFNELISLMESGLGLDRAHMGIFTELGVLYARYRPEKLMEHIKLFATRLNIPKLIRACDEQQHWMELTYLHIQYDEFDNAAATVMNHSPEAWDHMQFKDIIVKVASVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDILRKAGHIRLVKPYLVAVQSNNVSAVNEALNEIYVEEEDYDRLRESTDLHDNFDQIGLAQKVHPFLLSFRGKNDKFELLLTGLDKTYEQIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNHYKDCMETCSQSGDRELSEELLIYFIEQGKKECFASCLFVCYDIIRPDVALELAWMNNMLDFSFPYLLQFIREYTGKVDELIKDRIEAQKEEKAKEKEEKDVIAQQNMYAQLLPLALPAPPGMGGGYGAPPPPPPHMGGMGMPPMPPFGMPSMGSY 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4346 1452 Pfam Clathrin-H-link 93 158 - -
Sto5g4346 1452 PANTHER CLATHRIN HEAVY CHAIN 1261 1437 - -
Sto5g4346 1452 PANTHER CLATHRIN HEAVY CHAIN 1 1236 - -
Sto5g4346 1452 Pfam Clathrin, heavy-chain linker 68 91 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 715 860 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 864 1005 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 275 421 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1159 1330 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 422 564 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 275 417 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 1159 1346 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 569 708 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 715 860 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 864 1005 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SMART CLH_2 1010 1156 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Gene3D Tetratricopeptide repeat domain 918 1243 IPR011990 GO:0005515
Sto5g4346 1452 Gene3D Tetratricopeptide repeat domain 1256 1286 IPR011990 GO:0005515
Sto5g4346 1452 Gene3D Tetratricopeptide repeat domain 624 777 IPR011990 GO:0005515
Sto5g4346 1452 Gene3D Tetratricopeptide repeat domain 778 917 IPR011990 GO:0005515
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 569 708 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1010 1156 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SUPERFAMILY ARM repeat 181 515 IPR016024 -
Sto5g4346 1452 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1236 - -
Sto5g4346 1452 PANTHER CLATHRIN HEAVY CHAIN RELATED 1261 1437 - -
Sto5g4346 1452 PIRSF CHC 1256 1424 IPR016341 GO:0016192|GO:0032051|GO:0071439
Sto5g4346 1452 PIRSF CHC 1 1243 IPR016341 GO:0016192|GO:0032051|GO:0071439
Sto5g4346 1452 Gene3D - 1292 1388 - -
Sto5g4346 1452 Pfam Region in Clathrin and VPS 715 853 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 1260 1329 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 281 414 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 572 705 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 1012 1153 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 1162 1233 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 426 562 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 Pfam Region in Clathrin and VPS 867 1003 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SUPERFAMILY ARM repeat 921 1234 IPR016024 -
Sto5g4346 1452 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 422 564 IPR000547 GO:0006886|GO:0016192
Sto5g4346 1452 SUPERFAMILY ARM repeat 623 791 IPR016024 -
Sto5g4346 1452 SUPERFAMILY ARM repeat 69 224 IPR016024 -
Sto5g4346 1452 Gene3D - 70 231 IPR012331 -
Sto5g4346 1452 SUPERFAMILY Clathrin heavy-chain terminal domain 1 67 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Sto5g4346 1452 Coils Coil 1367 1402 - -
Sto5g4346 1452 Coils Coil 1199 1219 - -
Sto5g4346 1452 SUPERFAMILY ARM repeat 773 917 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4346 Sto-Chr5 52134946 52142461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4346 K04646 - gmx:100776763 2537.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4346 5 52134946 52142461 Sto5g4346 5 52134946 52142461 ECH
Sto9g2188 9 25557208 25572860 Sto5g4346 5 52134946 52142461 ECH