Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4345 ATGTCTTGCTCCGTCGCGCTCTCTAATTCTCCGGTGTTCTCTCCGTCATCGTCTCTCTTCTGTAATAAGCCCTCCATCATCTCCTCCTCCCCTGAATCTCTGTCCCTCACTCTGTCCCACCTCAAGCCGCCGCCGCCGTCTTCCGCCGCCGCGGCCTCGGCTTGTTCCTCGCCGTCGTCGCCTTCTTCCCCCTTTCGGCTTCGCTTCGCCAAGCCGCCGCCTCCCACTGGGCTCTCGGCTTCTACCTCGCCGAACGGCACCGTTTTGAAGAGGAAGAGACCGGCGAGGCTTGATATTCCCGTGGTGTCGTCGTCGTCTCTGAGTTTTGGGGTTCCGGCGACGCCGTCGGCGGCGGCGGCGAGGGATGTGGTTGAAGCGGAGGGATGTGGGTTTTCTGTGTATTGTAAAAGAGGGAGGAGAGAGTACATGGAAGATCGGTACTCTGCTTCTGTCAATCTTCAAGGAGACCCCAAACAGGCTTTCTTCGGGATATTTGATGGACATGGAGGAGCAAAAGCTGCAGAATTTGCAGCACAGAACTTGGAGAAGAATGTGGTGGATGAAGTgatgagaagagaagaagatgacatagaggaggcagtgaagaatggCTACCTCAACACAGATTCCGAGTTCTTGAAAGAGGATGTTCATGGCGGTTCTTGCTGTGTAACAGCTCTCATTAAGAATGGGAATCTTGTTGTGTCCAATGCTGGAGATTGTCGTGCTGTTATTAGCCATGGCGGCCTTGCTCAACCCCTCACATTCGATCATCGTCCTTCCAGGGAAGACGAAAAGGCCAGAATTGAAACTTCGGGTGGGTATGTTGATTTATGCCATGGAGTTTGGAGAATTCAAGGATCTCTAGCAGTTTCTAGAGGAATTGGAGATAGCCATTTGAAGCAATGGGTGATAGCTGAACCAGAGACTAGACTTGTCAGAATTGAACCTCATCATGACTTGTTGATATTAGCTTCTGATGGATTATGGGATAAGGTGAGTAATCAAGAAGCTGTGGATATTGCTCGTCCTCTTTGCATTGGAGGTGAAAGATCAGAGGCATTGATGGCCTGCAAAAAGCTTGTAAATTTGTCTGTGTCAAGAGGGtctcttgatgatattagtgttATGGTTGTAAGATTGGAGCAATACATTTGA 1158 0.4775 MSCSVALSNSPVFSPSSSLFCNKPSIISSSPESLSLTLSHLKPPPPSSAAAASACSSPSSPSSPFRLRFAKPPPPTGLSASTSPNGTVLKRKRPARLDIPVVSSSSLSFGVPATPSAAAARDVVEAEGCGFSVYCKRGRREYMEDRYSASVNLQGDPKQAFFGIFDGHGGAKAAEFAAQNLEKNVVDEVMRREEDDIEEAVKNGYLNTDSEFLKEDVHGGSCCVTALIKNGNLVVSNAGDCRAVISHGGLAQPLTFDHRPSREDEKARIETSGGYVDLCHGVWRIQGSLAVSRGIGDSHLKQWVIAEPETRLVRIEPHHDLLILASDGLWDKVSNQEAVDIARPLCIGGERSEALMACKKLVNLSVSRGSLDDISVMVVRLEQYI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4345 385 Gene3D - 121 385 IPR036457 -
Sto5g4345 385 ProSiteProfiles PPM-type phosphatase domain profile. 130 381 IPR001932 -
Sto5g4345 385 CDD PP2Cc 130 381 IPR001932 -
Sto5g4345 385 SUPERFAMILY PP2C-like 130 382 IPR036457 -
Sto5g4345 385 Pfam Protein phosphatase 2C 132 373 IPR001932 -
Sto5g4345 385 MobiDBLite consensus disorder prediction 36 92 - -
Sto5g4345 385 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 384 - -
Sto5g4345 385 PANTHER PROTEIN PHOSPHATASE 2C 3 384 IPR015655 GO:0004722|GO:0006470
Sto5g4345 385 SMART PP2C_4 120 379 IPR001932 -
Sto5g4345 385 ProSitePatterns PPM-type phosphatase domain signature. 161 169 IPR000222 GO:0043169
Sto5g4345 385 MobiDBLite consensus disorder prediction 50 64 - -
Sto5g4345 385 SMART PP2C_SIG_2 138 381 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4345 Sto-Chr5 52114544 52117323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4345 1 385 PP2C-type Phosphatase Gene Family AT2G30020 66.833 6.12e-176 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4345 K17506 - gmx:100797934 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2187 9 25544742 25546387 Sto5g4345 5 52114544 52117323 CCT
Sto5g4345 5 52114544 52117323 Sto5g4345 5 52114544 52117323 ECH
Sto9g2187 9 25544742 25546387 Sto5g4345 5 52114544 52117323 ECH