Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4334 ATGGATTTAGCTCGTGCTTTGGGGATTGACCCTGACGATCATACAGAATTGTCGAATCAGGTCAAGCTCTTCAAGAATGACCTATTGCGCTCAAATTCTGTATCGGAGAGGAGGATTTTAGTTTCCTTAGAAAGGATTTTGAATGATTGGTCTGTTGAGCCTAACATTGTGACTAGAAAGTTGGATTTCGACCTTGAAGATGATGCCCCTATTTCTCCCTTCAAAAATTTCCTCTGCCCACTGACAAAAGAAGTGATGAAGGATCCTGTGGTGTTGGAATCGTCCCAGACCTATGAACGAACTGCTATAGAGTATTGGTTTGAGAGGTGTATAGAGGATGGACGTGACCCAACTTGTCCTGTCTCTGGGAAGGTTCTCAAGTCCTTGGAGCTGAAACCCAATATTGGATTGGCAGGAGCAATTGAAGAGTGGATTAACAGGATTGTTGAATACCAAGTCAAATCTGCTGTGGAGCACTTAACTGAGGAACCACTGTCTATTGATCACGTTGAGCGAACTTTGGATAACATTTATAAGATTTCAGAAGAGCATCCCACAAGCAGATATATAGTCAGGAATGCTGGCATTGTAGTGCTGATAGTGAAGCTGCTTACTAATAGCTCAAAAGTTGTGGGATCGCGTTTGAGAAGCAAAGCTCTAATGGCTTTGGTCAGCATGGCCCACGATGAAGAAAGCAGGAATATAATGCTTGAAGGTGGTGTCACTAGATTGGCTGTACATAGTCTTATTGGTAGctcagagaaagagagagagtatgCTGTCAAATTATTACTGGAGTTCTGTAGCGATGAAGCTTGTTGCATTAGAGTTGCATTGGAGAAAGGTGCATTGGTTCTTCTCTCAAGTGTGGCAGGAAATCTAGAGTATCCTACTTTGTCCAATCTCGCTGAGGATGTCTTGAGGCAGTTGGAGAGGGTGGAGGATAATGTGCAACTTTTAGCTGCTGCTGGAAGATTTGAACCTTTACTTTCACGACTACGAGATGGTCCTGATGGTGTAAAGATAGAGATGGCTTCTCTGATCGGAAGGATGACCTTGACAAATAGCAGTAAAGAACAAATTGCTAGGCAAAGTGCTGGAGTACTTGTTGAACTATTGTCGAAGCCAGAAGGAAGAGGACCAAGTTTGCAAGCATTATATAGCCTGTCAGGATTGGATGACAATGCCGCCATCCTTGTTGAGTCTCCTGTCTTTCCATCTCTTATTGGAGTTCTTTTTGATGACCAGGATCCTTCAAATGAGTTTAGAACATTAGCTGCTTCAACAATTGCAAATATAGTATCAAAGCCGGGCCGTTGGGAATTAGCATCTGCTGACAGGAAGGGGAATTCAATGCAGTCAGAAAATATTGTTGTCAGACTATTGGAACTTTTAAACTGTTTGTCCTCTCAATGTCAACTATCTGTTCTTCGCATTCTTTATGGAATTACATCATCTCCGCAGGCATCAGaGTCAGTAGCCTTGCATATAAAGACCGGGGATGGCTTCAGAACAATCATACAATTTCTTGAACACCCAGAAGTCGAACTCAGAATATATGCTTTCAAGCTTACAAGACTTCTTTCTGAATTGTTCAGTCAAGATCTAGGAAATGAGCTGAGACTTTCCAACAAGCTCACCATACTCAAAGAAAAACTGTTGGATAACCAATCTACAGAGGATGAGAGATCAGCTTCAGGATGTATAATTGCGAACCTTTCCCTCTCAGGAGACGAAGTAAAGTCACTTCTAGGAGGCGATTTCTTGGGATGGATTGTCACCACTCTTAAAAACCAGAGGCGAGGCTCCAATGGAAGGATTTCGCAAACTGCTTTAAGCATGCTGGAAGGTCTTCTTGGTCTCTTACTTCACTTCACTAGGAACCTTGATGAACAAAGTCTCACTCTTGTTAGAGAAAATAGTCTCATGACGATTTTCTGTGAACAGCTTGACTATCCTTCCAACCTAAAGATAAGAAGACTTTCTGCCCTTGGATTGAAAAACTTATCAGAAATTGGAAGGTCAGTTATTCCTAAGGACTCTGAACCTCCACCTCCTAATGGGTTCTGCTCTTCCTTGGTGTTCATGTGTGGGAGGAGGAACTCTACTCAGAATTCCTCATGCCCTTTTCACAATAGTCCCTGTGAGGAAGATAGTCAATTATGTCTGCTTAAGTGCAATTGTATCAAGCCTCTAAATGATCTCCTCCATGATAATGACACTATTGTTCAAGTTGCTGCAGTGGAGGCACTTTCTACACTATTATTAGACTATACATCAAACAGCTTCAAAAGAGCCGTTGATGAGCTTGAGAATCTGGGTGTGGTTGATTCTGTGATCAATCTTTTCACAGAGGTAAGATCAGGGGAGCTTCAAGAGAAGACAATATGGATCGTAGAGAAAATATTGAGAGTGGAAAATCACACACATAAACACTCATTGAATCAAGCTCTTGTGAGGGGTTTGATTGAAGCCTTTAAGCATGGGAATACCAATGCCAGAAGGTATGCTCAAGAAGCTTTGACCCATCTAAAGCAAATATCAGGTGTTAGTGGGAAGACATCAAGTCAACCTCGGACTCGCAGGTAG 2589 0.4179 MDLARALGIDPDDHTELSNQVKLFKNDLLRSNSVSERRILVSLERILNDWSVEPNIVTRKLDFDLEDDAPISPFKNFLCPLTKEVMKDPVVLESSQTYERTAIEYWFERCIEDGRDPTCPVSGKVLKSLELKPNIGLAGAIEEWINRIVEYQVKSAVEHLTEEPLSIDHVERTLDNIYKISEEHPTSRYIVRNAGIVVLIVKLLTNSSKVVGSRLRSKALMALVSMAHDEESRNIMLEGGVTRLAVHSLIGSSEKEREYAVKLLLEFCSDEACCIRVALEKGALVLLSSVAGNLEYPTLSNLAEDVLRQLERVEDNVQLLAAAGRFEPLLSRLRDGPDGVKIEMASLIGRMTLTNSSKEQIARQSAGVLVELLSKPEGRGPSLQALYSLSGLDDNAAILVESPVFPSLIGVLFDDQDPSNEFRTLAASTIANIVSKPGRWELASADRKGNSMQSENIVVRLLELLNCLSSQCQLSVLRILYGITSSPQASESVALHIKTGDGFRTIIQFLEHPEVELRIYAFKLTRLLSELFSQDLGNELRLSNKLTILKEKLLDNQSTEDERSASGCIIANLSLSGDEVKSLLGGDFLGWIVTTLKNQRRGSNGRISQTALSMLEGLLGLLLHFTRNLDEQSLTLVRENSLMTIFCEQLDYPSNLKIRRLSALGLKNLSEIGRSVIPKDSEPPPPNGFCSSLVFMCGRRNSTQNSSCPFHNSPCEEDSQLCLLKCNCIKPLNDLLHDNDTIVQVAAVEALSTLLLDYTSNSFKRAVDELENLGVVDSVINLFTEVRSGELQEKTIWIVEKILRVENHTHKHSLNQALVRGLIEAFKHGNTNARRYAQEALTHLKQISGVSGKTSSQPRTRR 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4334 862 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 857 - -
Sto5g4334 862 SUPERFAMILY RING/U-box 66 147 - -
Sto5g4334 862 CDD RING-Ubox_PUB 77 124 IPR045210 -
Sto5g4334 862 Coils Coil 303 323 - -
Sto5g4334 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 148 IPR013083 -
Sto5g4334 862 ProSiteProfiles U-box domain profile. 72 151 IPR003613 GO:0004842|GO:0016567
Sto5g4334 862 Gene3D - 706 853 IPR011989 -
Sto5g4334 862 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 857 - -
Sto5g4334 862 SMART Ubox_2 76 144 IPR003613 GO:0004842|GO:0016567
Sto5g4334 862 SUPERFAMILY ARM repeat 160 597 IPR016024 -
Sto5g4334 862 SUPERFAMILY ARM repeat 632 848 IPR016024 -
Sto5g4334 862 SMART arm_5 392 435 IPR000225 GO:0005515
Sto5g4334 862 SMART arm_5 715 756 IPR000225 GO:0005515
Sto5g4334 862 SMART arm_5 630 671 IPR000225 GO:0005515
Sto5g4334 862 SMART arm_5 184 228 IPR000225 GO:0005515
Sto5g4334 862 Pfam U-box domain 76 146 IPR003613 GO:0004842|GO:0016567
Sto5g4334 862 Gene3D - 149 673 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4334 Sto-Chr5 52032220 52036434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4334 74 851 U-box Gene Family AT1G20780 30.025 1.30e-91 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4334 - - ccaj:109816409 1213.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4334 5 52032220 52036434 Sto5g4334 5 52032220 52036434 ECH