Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4323 ATGAATCCTTTAACCCTAGTTAAACGCATTCAGAATATCAATTCCAAGGAAGCTTCTCTTGGCATCGGCGAGGACGCTTCTTGGCACGCCAAATACAAAGATTCGGCTTATGTATTTGTGGGTGGCATTCCCTTTGATCTCACTGAAGGGGATCTCCTCGCGGTTTTTGCTCAATACGGGGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGTACTGGGAAATCAAAAGGTTTTGCATTTCTTGCGTATGAAGATCAAAGAAGCACGAATCTTGCAGTAGaTAATCTGAATGGAGCACAGATTTTAGGTAGGATCATTAGGGTTGATCATGTTactaaatataaaaagaaagaagaggaagatgaagagACACAGAGGCAGAAAAGGGAGAGTCGCGGTGTTTGTCGGGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAACACAGGGTGGGGGGCCCCTGAGGATGATAGCTCAAAATGGGGTCATGATAAATTTGAGGGTCAAAGAAAGGAGAAAAGATATAGTGGCAATCAATCAAACCATATTTCAGAAACCAGAGAGAGAGATTTTCGCCCCAAAGCCCAGGGCAATGAGATGGGATTAGCAAGTCAACCCAAACGAAGTGAGAGGAGAGAAGAGAAGATATTGCAGAGGCCTGATGACGATAAATTCGAGGGAAGAGGAAataatcatagaagagaggagAAGAGATCCAGAAGGCATGAAGATGATGAATTTGCCCATAGGTCAAGAGAAGACCGTGATAGAAGGGAGGATAAAGGATCAAGAAGGCATGGTGATGATGATATGGAACCTGAGCCAAGAGATCATCGTAGAAGGGAAGACACAAGGTCAAGAAAGCCAGATGATGTTGAGTTTGAACCCAAGTCTAGAGATTCAGATAGAAGGGAAGATAAGAAGTACAGGAGGCAGGATAATGATGATTCTGGAAGTAGGTCAAGGCAGCACAGAGAATATGATTCAAGGTCGAGAGAAAATTATGATAAGAAGCAAGAGAACAGATCATATAGAAATGATAGTGATAGATCAGAGCACAAAGTAAGATATGATAtggatggaaaagaagagaagagatcAAGAAGTCTCATCTGTCATCTTAGCCAAAATTCTGATATAACTGGTCTCTTCTCATGGTGGTGGAGGCAGGAGGCAAAATATCCACCATCTTTACTAAACAAAGCACTAGGCAAAACCCCAGGAGGAACTGGAATGGAGAAACCAGGGATCAATACCTCTGGATCAGAATCCCTAAACTCATGA 1323 0.4036 MNPLTLVKRIQNINSKEASLGIGEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETQRQKRESRGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDDSSKWGHDKFEGQRKEKRYSGNQSNHISETRERDFRPKAQGNEMGLASQPKRSERREEKILQRPDDDKFEGRGNNHRREEKRSRRHEDDEFAHRSREDRDRREDKGSRRHGDDDMEPEPRDHRRREDTRSRKPDDVEFEPKSRDSDRREDKKYRRQDNDDSGSRSRQHREYDSRSRENYDKKQENRSYRNDSDRSEHKVRYDMDGKEEKRSRSLICHLSQNSDITGLFSWWWRQEAKYPPSLLNKALGKTPGGTGMEKPGINTSGSESLNS 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4323 440 MobiDBLite consensus disorder prediction 218 380 - -
Sto5g4323 440 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 307 - -
Sto5g4323 440 SUPERFAMILY RNA-binding domain, RBD 27 117 IPR035979 GO:0003676
Sto5g4323 440 SUPERFAMILY CCCH zinc finger 132 155 IPR036855 GO:0046872
Sto5g4323 440 Gene3D - 11 127 IPR012677 -
Sto5g4323 440 CDD RRM_ist3_like 27 112 IPR045844 GO:0000398|GO:0003723
Sto5g4323 440 SMART rrm1_1 37 110 IPR000504 GO:0003723
Sto5g4323 440 MobiDBLite consensus disorder prediction 426 440 - -
Sto5g4323 440 MobiDBLite consensus disorder prediction 170 208 - -
Sto5g4323 440 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 155 IPR000571 GO:0046872
Sto5g4323 440 ProSiteProfiles Zinc finger C3H1-type profile. 130 157 IPR000571 GO:0046872
Sto5g4323 440 MobiDBLite consensus disorder prediction 415 440 - -
Sto5g4323 440 SMART c3hfinal6 132 156 IPR000571 GO:0046872
Sto5g4323 440 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 1 307 - -
Sto5g4323 440 Gene3D - 128 203 - -
Sto5g4323 440 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Sto5g4323 440 MobiDBLite consensus disorder prediction 154 380 - -
Sto5g4323 440 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4323 Sto-Chr5 51949733 51954425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4323 38 111 Eukaryotic Initiation Factors Gene Family AT4G34110 31.081 5.72e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4323 K13107 - gmx:100792988 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4323 5 51949733 51954425 Sto5g4323 5 51949733 51954425 ECH