Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto5g4323 | ATGAATCCTTTAACCCTAGTTAAACGCATTCAGAATATCAATTCCAAGGAAGCTTCTCTTGGCATCGGCGAGGACGCTTCTTGGCACGCCAAATACAAAGATTCGGCTTATGTATTTGTGGGTGGCATTCCCTTTGATCTCACTGAAGGGGATCTCCTCGCGGTTTTTGCTCAATACGGGGAGGTTGTTGATGTTAATCTTGTTAGGGACAAAGGTACTGGGAAATCAAAAGGTTTTGCATTTCTTGCGTATGAAGATCAAAGAAGCACGAATCTTGCAGTAGaTAATCTGAATGGAGCACAGATTTTAGGTAGGATCATTAGGGTTGATCATGTTactaaatataaaaagaaagaagaggaagatgaagagACACAGAGGCAGAAAAGGGAGAGTCGCGGTGTTTGTCGGGCTTTCCAAAGAGGTGAATGTACTCGTGGAGCTAGCTGCAAATTTTCTCATGATGAACAAAGAGCTGCAAACACAGGGTGGGGGGCCCCTGAGGATGATAGCTCAAAATGGGGTCATGATAAATTTGAGGGTCAAAGAAAGGAGAAAAGATATAGTGGCAATCAATCAAACCATATTTCAGAAACCAGAGAGAGAGATTTTCGCCCCAAAGCCCAGGGCAATGAGATGGGATTAGCAAGTCAACCCAAACGAAGTGAGAGGAGAGAAGAGAAGATATTGCAGAGGCCTGATGACGATAAATTCGAGGGAAGAGGAAataatcatagaagagaggagAAGAGATCCAGAAGGCATGAAGATGATGAATTTGCCCATAGGTCAAGAGAAGACCGTGATAGAAGGGAGGATAAAGGATCAAGAAGGCATGGTGATGATGATATGGAACCTGAGCCAAGAGATCATCGTAGAAGGGAAGACACAAGGTCAAGAAAGCCAGATGATGTTGAGTTTGAACCCAAGTCTAGAGATTCAGATAGAAGGGAAGATAAGAAGTACAGGAGGCAGGATAATGATGATTCTGGAAGTAGGTCAAGGCAGCACAGAGAATATGATTCAAGGTCGAGAGAAAATTATGATAAGAAGCAAGAGAACAGATCATATAGAAATGATAGTGATAGATCAGAGCACAAAGTAAGATATGATAtggatggaaaagaagagaagagatcAAGAAGTCTCATCTGTCATCTTAGCCAAAATTCTGATATAACTGGTCTCTTCTCATGGTGGTGGAGGCAGGAGGCAAAATATCCACCATCTTTACTAAACAAAGCACTAGGCAAAACCCCAGGAGGAACTGGAATGGAGAAACCAGGGATCAATACCTCTGGATCAGAATCCCTAAACTCATGA | 1323 | 0.4036 | MNPLTLVKRIQNINSKEASLGIGEDASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETQRQKRESRGVCRAFQRGECTRGASCKFSHDEQRAANTGWGAPEDDSSKWGHDKFEGQRKEKRYSGNQSNHISETRERDFRPKAQGNEMGLASQPKRSERREEKILQRPDDDKFEGRGNNHRREEKRSRRHEDDEFAHRSREDRDRREDKGSRRHGDDDMEPEPRDHRRREDTRSRKPDDVEFEPKSRDSDRREDKKYRRQDNDDSGSRSRQHREYDSRSRENYDKKQENRSYRNDSDRSEHKVRYDMDGKEEKRSRSLICHLSQNSDITGLFSWWWRQEAKYPPSLLNKALGKTPGGTGMEKPGINTSGSESLNS | 440 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto5g4323 | 440 | MobiDBLite | consensus disorder prediction | 218 | 380 | - | - | |
Sto5g4323 | 440 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 1 | 307 | - | - | |
Sto5g4323 | 440 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 117 | IPR035979 | GO:0003676 | |
Sto5g4323 | 440 | SUPERFAMILY | CCCH zinc finger | 132 | 155 | IPR036855 | GO:0046872 | |
Sto5g4323 | 440 | Gene3D | - | 11 | 127 | IPR012677 | - | |
Sto5g4323 | 440 | CDD | RRM_ist3_like | 27 | 112 | IPR045844 | GO:0000398|GO:0003723 | |
Sto5g4323 | 440 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 | |
Sto5g4323 | 440 | MobiDBLite | consensus disorder prediction | 426 | 440 | - | - | |
Sto5g4323 | 440 | MobiDBLite | consensus disorder prediction | 170 | 208 | - | - | |
Sto5g4323 | 440 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 135 | 155 | IPR000571 | GO:0046872 | |
Sto5g4323 | 440 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 157 | IPR000571 | GO:0046872 | |
Sto5g4323 | 440 | MobiDBLite | consensus disorder prediction | 415 | 440 | - | - | |
Sto5g4323 | 440 | SMART | c3hfinal6 | 132 | 156 | IPR000571 | GO:0046872 | |
Sto5g4323 | 440 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 1 | 307 | - | - | |
Sto5g4323 | 440 | Gene3D | - | 128 | 203 | - | - | |
Sto5g4323 | 440 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
Sto5g4323 | 440 | MobiDBLite | consensus disorder prediction | 154 | 380 | - | - | |
Sto5g4323 | 440 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 107 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto5g4323 | Sto-Chr5 | 51949733 | 51954425 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto5g4323 | 38 | 111 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 31.081 | 5.72e-06 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto5g4323 | K13107 | - | gmx:100792988 | 452.595 |