Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4311 ATGAAGTGGGAAATGGAGATCCTCCAATCTTCTTCCCCTTACATTTCCAACCCAAATTGGCACACAAAATGGACTCCTGCTGAGAACAAATTGTTCGAGAATGCCCTCGCCTTCTACGATAAGGACACGCCGGACCGGTGGGCCAGGGTTGCCGCAATGATTCCCGGGAAGACGGTTGGGGATGTCATGAAGCAGTACAAGGAGTTAGAAGAAGATGTTTGTAATATTGAAGCAGGATTAGTACCTATTCCTCCTGGCTATGATGGTAGTAGTACTAATACATCCTCACAATTCACTTTGGATTGGGTTAACACTTCAGGGTTTGATGCTTTTAAACCACATGGTGGGAAAagatcatcttcatcttcttcatcaggAAGACCTCCTgagcaagaaagaaagaaaggtgtTCCATGGACAGAAGAGGAGCATAAGCTATTCCTGCTGGGTCTGAAGAAGTATGGCAAAGGTGATTGGAGGAACATATCTCGGAACTTCGTCGTGACTCGAACGCCGACGCAGGTTGCGAGCCATGCTCAGAAGTACTTCATAAGGCAACTCTCCGGAGGGAAAGACAAGAGGAGAGCAAGCATCCATGACATAACAACGGTGAATCTCTCAGAAACAACCtcaagaacaacaacaacaacaacaacaacatcacCATCTTGTCCTGTCTTAgaagacaacaacaacaacaacaacaacagaaCATGTAACTCCAAGCAGGACACAAATTCTAGTGCTCAAGGGCATTTTTGGAATcaagcaaataataataataataatgcaagAATGGCTATGGGTTTGAATCCTAATTATGGGATTACCACTTATGCCCAAAATTTGCATTCAAGTGCTCTTCatgagtcttcttcttcttcttcttcttacttgTTAGGACCTCAGACTCAGAATATGGTTTTACAAATGCAACAACCCACACAACACTTCTCCCATGCTTGA 966 0.3716 MKWEMEILQSSSPYISNPNWHTKWTPAENKLFENALAFYDKDTPDRWARVAAMIPGKTVGDVMKQYKELEEDVCNIEAGLVPIPPGYDGSSTNTSSQFTLDWVNTSGFDAFKPHGGKRSSSSSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTSRTTTTTTTTSPSCPVLEDNNNNNNNRTCNSKQDTNSSAQGHFWNQANNNNNNARMAMGLNPNYGITTYAQNLHSSALHESSSSSSSYLLGPQTQNMVLQMQQPTQHFSHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4311 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Sto5g4311 321 Gene3D - 137 187 - -
Sto5g4311 321 MobiDBLite consensus disorder prediction 209 264 - -
Sto5g4311 321 Pfam Myb-like DNA-binding domain 138 183 IPR001005 -
Sto5g4311 321 Pfam Myb-like DNA-binding domain 23 67 IPR001005 -
Sto5g4311 321 MobiDBLite consensus disorder prediction 111 139 - -
Sto5g4311 321 CDD SANT 138 183 IPR001005 -
Sto5g4311 321 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Sto5g4311 321 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Sto5g4311 321 SUPERFAMILY Homeodomain-like 22 77 IPR009057 -
Sto5g4311 321 CDD SANT 23 69 IPR001005 -
Sto5g4311 321 SMART sant 20 72 IPR001005 -
Sto5g4311 321 SMART sant 135 185 IPR001005 -
Sto5g4311 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Sto5g4311 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 274 IPR043363 -
Sto5g4311 321 Gene3D - 19 83 - -
Sto5g4311 321 SUPERFAMILY Homeodomain-like 132 186 IPR009057 -
Sto5g4311 321 PANTHER MYB TRANSCRIPTION FACTOR MYB51 17 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4311 Sto-Chr5 51869099 51870552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto5g4311 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4311 - - gmx:100784163 347.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4311 5 51869099 51870552 Sto5g4311 5 51869099 51870552 ECH
Sto5g4311 5 51869099 51870552 Sto5g1550 5 10778314 10779622 ECH
Sto9g2132 9 25087588 25090670 Sto5g4311 5 51869099 51870552 ECH
Sto8g1130 8 7168582 7171213 Sto5g4311 5 51869099 51870552 ECH
Sto1g2301 1 30991622 30992851 Sto5g4311 5 51869099 51870552 ECH