Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4305 ATGGATTTCGATGATGATTACTACAGCGGCGGAGAGGAAGAGGATCAGATGTTGTATACCGACGATGATACCGATGCGGAGGATTTCGATTTCATCGACAATGCTTCCGATAGTTCTGAGCTCGCTCTCTCGAATCGTCACCATGTGCGAAACTATACAGTCTTGAGTGAAAGCGACATTCGTCAACGTCAAGAGGATGATATTACAAAGATATCTACTGTGCTATCCATTTCAAAGGTTGCAGCTAGTATACTGCTTCGCCATTATAATTGGAACGTTGGTAAAATACATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGCAGTACTGTTGGCTTGTTGGAGAATCCCGTTATGGAATATAAAGACGCTAGCGAGGCAACTTGTGGGATCTGTTTTGATACCTATCCCAGTGGTGAGATGCTTGATGCTGGTTGTGGCCACCCATTTTGTAGCTCATGCTGGGCAGgtTACGTTAGCATAGCCATCAATGATGGTCCAGGATGCTTGTTGTTGCGATGTCCTGATCCATCATGCTGTGCTGCTGTTGGTCAAGATATGATCAATTTATTGGCTTCTGGCGAAGAAAAGGAGAAGTACTGTGGTTATTTTACTAGATCTTATATTGAGGACAACAGAAAGACAAAATGGTGCCCTGCTCCTGGCTGTGATTATGCTGTGGACTTTTGTGGTGGTCGTGGTGGCGGCGGAGGCTATGATGTTACGTGCCATTGCTCATGTAGTTTTTGCTGGAATTGCACTGAAGAAGCACATAGGCCTGTTGATTGTGATACTGTGGCCAAATGGATATTGAAGAATTGCGCTGAATCTGAAAATATGAATTGGATATTGGCCAATTCAAAACCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGTtgtatgcatatgacatgcacACCACCTTGCAAGTATGAGTTTTGCTGGCTCTGCCTTGGTCCATGGACTGATCATGGTCAGACAACAGGTGGTTTTTATGCATGTAATCGTTATGAAGAAGCAAAAGCCGATAAAGAGTTTCAAGAGGCTGAACAACAGAGAGAAATAATCAAGAACTCTCTTGAAAGATATTATCACTATTATGAAAGATGGGCAACCAATCAATCATCCAGGCAAAAAGCTCTTGCAGACCTACAGCAAATGCAAACTGTGCATCTTGAGAAGCTCAGTGACTTACAGTGTCAGCCTGAGTCACAGCTAAAATTCATAACAGAGGCCTGGTTACAGATTGTTGAATGCAGACGTGTTTTGAAATGGACCTATGCCTATGGCTACTATTTACCTGAGGAGGAGAAGGCCAAGAGAGAGTTTTTTGAATACTTACAAGGTGAAGCTGAGGCTGCATTGGAACGACTTCATCAGTGTGCTGAGAAGGAATTGGAAGTTTACCTCAATGTAAAGGATCCAGAAACAGATTTTAACTGTTTCCGCACTAAACTTTCTGGACTAACCAGTGTGACCAAGACCTTCTTTGAGAATTTAGTGAAAGCTCTGGAGAATGGCTTATCAGATGTGAACGCTCACGCTGCAAGCAACTAG 1566 0.4246 MDFDDDYYSGGEEEDQMLYTDDDTDAEDFDFIDNASDSSELALSNRHHVRNYTVLSESDIRQRQEDDITKISTVLSISKVAASILLRHYNWNVGKIHDEWFADEEKVRSTVGLLENPVMEYKDASEATCGICFDTYPSGEMLDAGCGHPFCSSCWAGYVSIAINDGPGCLLLRCPDPSCCAAVGQDMINLLASGEEKEKYCGYFTRSYIEDNRKTKWCPAPGCDYAVDFCGGRGGGGGYDVTCHCSCSFCWNCTEEAHRPVDCDTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGPWTDHGQTTGGFYACNRYEEAKADKEFQEAEQQREIIKNSLERYYHYYERWATNQSSRQKALADLQQMQTVHLEKLSDLQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEEEKAKREFFEYLQGEAEAALERLHQCAEKELEVYLNVKDPETDFNCFRTKLSGLTSVTKTFFENLVKALENGLSDVNAHAASN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4305 521 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 21 512 IPR031127 GO:0004842|GO:0016567
Sto5g4305 521 CDD RING-HC_RBR_TRIAD1_like 129 179 - -
Sto5g4305 521 SUPERFAMILY RING/U-box 282 331 - -
Sto5g4305 521 Pfam IBR domain, a half RING-finger domain 280 329 IPR002867 -
Sto5g4305 521 Pfam IBR domain, a half RING-finger domain 198 263 IPR002867 -
Sto5g4305 521 MobiDBLite consensus disorder prediction 1 20 - -
Sto5g4305 521 Gene3D - 259 514 - -
Sto5g4305 521 ProSiteProfiles TRIAD supradomain profile. 125 341 IPR044066 -
Sto5g4305 521 Coils Coil 342 362 - -
Sto5g4305 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 208 IPR013083 -
Sto5g4305 521 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 21 512 - -
Sto5g4305 521 SUPERFAMILY RING/U-box 125 210 - -
Sto5g4305 521 SUPERFAMILY RING/U-box 198 270 - -
Sto5g4305 521 Pfam Ariadne domain 351 511 IPR045840 -
Sto5g4305 521 ProSiteProfiles Zinc finger RING-type profile. 129 173 IPR001841 -
Sto5g4305 521 SMART ibrneu5 198 263 IPR002867 -
Sto5g4305 521 SMART ibrneu5 272 337 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4305 Sto-Chr5 51816841 51826538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4305 1 519 ARIADNE family AT1G65430 70.713 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4305 K11968 - cit:102630454 857.825