Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4289 ATGAGTTCCTTCTCCATTACACGGAAAAAAACACCATTCCAAAAGCACAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCTGAAGATGAAACTGCTCGGTTGTATGCCGAGTTTGTTGAGTCATTTCAAGGAGATAGCACTCCTGGGTCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAAAAACTAAAAGCAGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTGTCTGGTACAAAGAAGGGAAGTAGGTATGTTCCGTCTTTTATACCTCCTCCTTTGGCAACCAAGGGGAAAGAATCTGAAAAGAAAAAAGAGGAGGAGAAGCCAAGGGAGAAAGAGAAAGGTAAGTCACGGAACATAGATCATTTTATGGAGGAGTTAAAACAGGAGCAAGAGATGAGGGAGAAACGAAATCAAGAACGTGAACATTGGCGTGACGGGCGCAGTGTGGAACATTCTACTATCAGTCGCTTTGATGAACTGCCAGATGATTTTGATCCTAGTGGAAAATTGCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTCTATGTTGGAAATCTCTCACCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAAGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTAGCTTTCATGAATAGAGCTGACGGACAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTATGAGtatgaattgaaaattggaTGGGGTAAGTCTGTTGCTCTCCCATCACAAGCACTACCTGCACCACCGCCAGGGCATATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGTGGTCCATCAGGTCCACCTGTAACATCTGTGCCAAATCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGAGGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTCTTGGATGGAGGCTGTGCTTTTGAACAAGCTATTATGGAGAGGGGTCGTGGCAATCCTCTGTTCAACTTCTTGTTTGAGCTGGGCTCCAAGGAACATACTTATTATGTTTGGAGACTCTATTCATTTGCTCAGGGTGACACTCTCCAAAGATGGCGGACAGAACCTTTTATCATGATAACTGGTAGTGGAAGGTGGATTCCTCCCTCCTTGCCAACTGCAAAAAGTCCTGAACATGAAAAGGAGTCTGGTTCCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAGCCTGAAAGAACACTAACTGATGCACAAAGGGACGAGTTTGAGGATATGCTGCGTGCTTTAACATTAGAAAGGAGTCAAATAAAAGATGCTATGGGGTTTGCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTCTTGACAGAATCCTTGACACTTAAAGAAACTCCTATTCCAACAAAAGTTGCAAGACTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCCCCTGTAAGAAATGCGTCTGCATATCGCACCAAGTTTGAAGCAACGTTACCTGACATAATGGAGAGTTTTAATGACTTGTATCGTAGCGTAACAGGTCGTATTACTGCCGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCCGATTGGTTTCTCTTTTCAGATGCTTATGTGAATGGCTTACGAGCCACATTCCTTCGATCTGGAAACTCGGGTGTCACACTATTTCATTCCATTTGTGGTGATGCACCTGAAATCGAGAAAAATATAAACTCTGAAGATATAGTTGATGGTGGCAAGAGCAACCAAGATTCTGCACTAGCAATGGGTCGAGGAGCTGCAATGAAAGAGCTTATGTCTCTTCCTCTTGCTGAGCTAGAAAGACGGTGCCGACACAATGGATTGTCGCTTGTTGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGTCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGATGATTTGAAATATGCTCAGAGCCAAGCAAGTTCAGGGAGATATTCAAGTACTCGGAGAGAGACAAGCATTGAGCCCGAACCCGTGGTTTTCTCTGGATGGGACCATTATGGGGAGGATGATTTGCAGTCACAAGGCAAAGGTTCAGTCCCTTTGGCACAAACGTTGCCCATTCCTCACCCAGATATTAAAGCCTTCTCAAAAAGGGAGAAGAATGATCCTGTTTTGCCAGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAACATAAGAGTAGTGGAAAGGGACTAGGGCTAACCTACTCTTCCTCTGGTAGTGAGAATGCTGGTGATGGTACTATTAAGGCAGATGAATTGGAGTCTGGTGCTGATACAAGCATTTCAGCACAACCTGATATCGGAATGAATGAAGAGCAGAGGCAGAAGTTGAGACGCCTGGAGGTTGCTTTAATTGAATACCGCGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGATAGAAAAGTTGCAATGCACCGGAAACGGCTGCAAGCAGAATTTGGGTTATCAGATTCTAGTGAAGATGGTCAAGGAAATAGAAGAACGTCTTCAGAGAGGAGGGATAGACGTGAAGATTCACATGACATCTCAAGGAAACGCCATCGTAGCCGTAGTCGAAGTCACAGTCCACAACGGAAATTGTCAAGCAGAGACCGGGAGAGGGAGCATGATGCGGACAGAGACCGAGATAGACACAAGGATAGAATTTATGATTTTGATAGTGATAGAGGGAAGGACCGAGATCGGGAGCGGGAGAAGAGCGGAAGTAGAGAGAGGGATGATCATGATAGGGAGAGGAGCAGAGATAGAGACCGGAGGAGAAGGGCAAAATAA 2937 0.4471 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDSTPGSKAFVRGGTINPNEKLKADSEGEKSKDGVSGTKKGSRYVPSFIPPPLATKGKESEKKKEEEKPREKEKGKSRNIDHFMEELKQEQEMREKRNQEREHWRDGRSVEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGATVILSGGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEEEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGSTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKDAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSVTGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVTLFHSICGDAPEIEKNINSEDIVDGGKSNQDSALAMGRGAAMKELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDDLKYAQSQASSGRYSSTRRETSIEPEPVVFSGWDHYGEDDLQSQGKGSVPLAQTLPIPHPDIKAFSKREKNDPVLPASKWAREDDESDDEHKSSGKGLGLTYSSSGSENAGDGTIKADELESGADTSISAQPDIGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDRKVAMHRKRLQAEFGLSDSSEDGQGNRRTSSERRDRREDSHDISRKRHRSRSRSHSPQRKLSSRDREREHDADRDRDRHKDRIYDFDSDRGKDRDREREKSGSRERDDHDRERSRDRDRRRRAK 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4289 978 Gene3D - 820 871 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 685 825 - -
Sto5g4289 978 SMART 558neu5 451 586 IPR006569 -
Sto5g4289 978 Pfam cwf21 domain 821 867 IPR013170 -
Sto5g4289 978 SMART cwf21_2 820 869 IPR013170 -
Sto5g4289 978 Coils Coil 449 469 - -
Sto5g4289 978 PANTHER - 5 973 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 912 971 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 1 154 - -
Sto5g4289 978 Pfam CID domain 451 579 IPR006569 -
Sto5g4289 978 Gene3D - 444 591 IPR008942 -
Sto5g4289 978 SMART surpneu2 334 388 IPR000061 GO:0003723|GO:0006396
Sto5g4289 978 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 267 IPR000504 GO:0003723
Sto5g4289 978 SUPERFAMILY ENTH/VHS domain 448 587 IPR008942 -
Sto5g4289 978 MobiDBLite consensus disorder prediction 411 444 - -
Sto5g4289 978 SUPERFAMILY Surp module (SWAP domain) 310 391 IPR035967 GO:0003723|GO:0006396
Sto5g4289 978 Coils Coil 821 841 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 879 899 - -
Sto5g4289 978 Coils Coil 17 37 - -
Sto5g4289 978 Gene3D Surp module 322 391 IPR035967 GO:0003723|GO:0006396
Sto5g4289 978 PANTHER RNA PROCESSING PROTEIN LD23810P 5 973 - -
Sto5g4289 978 SMART rrm1_1 187 263 IPR000504 GO:0003723
Sto5g4289 978 MobiDBLite consensus disorder prediction 418 444 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 99 154 - -
Sto5g4289 978 SUPERFAMILY RNA-binding domain, RBD 179 274 IPR035979 GO:0003676
Sto5g4289 978 MobiDBLite consensus disorder prediction 781 795 - -
Sto5g4289 978 ProSiteProfiles SURP motif repeat profile. 336 379 IPR000061 GO:0003723|GO:0006396
Sto5g4289 978 MobiDBLite consensus disorder prediction 65 80 - -
Sto5g4289 978 Coils Coil 123 143 - -
Sto5g4289 978 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 260 IPR000504 GO:0003723
Sto5g4289 978 ProSiteProfiles SAP motif profile. 638 672 IPR003034 -
Sto5g4289 978 ProSiteProfiles CID domain profile. 444 589 IPR006569 -
Sto5g4289 978 MobiDBLite consensus disorder prediction 11 35 - -
Sto5g4289 978 CDD RRM_SR140 185 268 IPR035009 -
Sto5g4289 978 MobiDBLite consensus disorder prediction 746 779 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 866 978 - -
Sto5g4289 978 MobiDBLite consensus disorder prediction 688 706 - -
Sto5g4289 978 Pfam Surp module 334 386 IPR000061 GO:0003723|GO:0006396
Sto5g4289 978 Gene3D - 97 269 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4289 183 263 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.51e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4289 K12842 - gmx:100776093 1563.13