Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4283 ATGCCAATCCCATCTTCATCATtcacaaaccccaaatcttcATCATCGCAttaccctcctcctcctcccaccCCCAGAATCCGCCGCCCTCGCCGGCGGCCCCCCGCCGGAAAACCCACTTCCGGCGAGCCCCCCCGGAGGGATTGGAAGCCAAAGTTGGAGACTTTATTGGATGGAGAGGTGGATTATAGTTATGATGAGAGTGTTAGGAGCAGAGAGAGTGATGGGGAAGAGAAATGGAGGGTTGAGGCTGAGATGTTGAGAGCAGAGTGTAATGGAAGAATAAAGATTTGTGAGGGAAAAGATGTTGATGCAGTATTGAAGGAAGAGATCCAAGAGCTCACAGAGAAGCTTGAAAAATTGCAGAGGAGATCATGTGCTAAGGATTCACAGATAAGAAACAACAGTAATTTCGACACACAAGTCTCGGTTCATCGTCGAAGATGGCTAGACAAAAATGGAGGATCTTCAGATGAGGTGGAGATCCTGAGAAGGAAAATGGAGGGATTGTCAAAAGGGATATTATTGCAAAAAATGGAGGAAGAGTATAATTCAACTTCCAAGAGATTGGAATTTCAAGATTTATCGTCCGTCATTAGAGCACCTCATCAGGAAAAAGTGGGAGGTGAAGGGAACATGTGCTATGGACAATGCAAGGCAGTAGTACAGAGGATTGTAGAGGAAGTAAGAGCAGAGACAGAACAATGGTCCCTAATGCAAGAGATGCTTGGTCAAGTAAGGGAGGAGATGGAGGAATTGCAGGCTTCTCGCGATTTTTGGGAAGATCGCGCCATTAATTCGGATtacaaaatccaaaccctacacGATGCTGTCCAAGAATGGAAACAGAGAGCTCTTTCATCTGAAACCAAAGCTAATGATCTCGAAGCGAAATTGTCCGTGCTACGTCGCGACCTTGAGACgttcaaaaaggaaaagaacaaCAATGTGCAACCGGCGAAATGTTCCCCGGTTCCCTCGGAGGCGCAGATCGAGTTGGAGAAGCGAATACTAGTTTGTTACTCCAAAGAAAACGACAATCACACTAATGCAGACAATAAGTACGAGACGAATGAGGTATCGATAACGGAACGAAGAAGGGGGACACATGGCGTAGGTCCGAAGCGACATCCATTCCAAGATATTAGGAACTCCTCATCATTGTTGATGAGATTTCATCCCACAGAACAAGAGGTCATGGAGTATCTAATCAAGAAAGTAATGAACCAACCTTATACGCTTCCCATTCCGGAAGTTGAAGTGTATCAACACAATCCTGAACAACTCACAAAGGATTATTCGAGTATGAATCCTGGGGAAGAAGAGTGGTACTTTTTCTCTCAAAGGGAGAAATTGTATCCGAAAAGAGGTGTAACTAAAAGAACAGCACCAGGTGGTTATTGGAACACAAGTGGGACAGAAACATCGGTTTTGTTCGGAGGAAGAACGATTGGACATTGGAGGACAATGGTTTTCTACGAAGGGAAACGTCAAGATAAGCCCAAGAAGCCCACACATTGGTTAATGCGTGAATATAGTTTGGTTGGGTCTGAATCTGATGATCAAACTTGTCATCATCGTGATATTAACATGAAGATGGATGATGATTGGGTTTTGTGTAAGATTTATAAGAATGGTAGGAACTACAGGAGCAGAGGTAGTAGTACTCATCATCAGCAGAACAATTCCGATTATGATCAGAAGAACTCAAGTCAAATGTTTCATGGTTCAGAGTGGATGAAGAAAGTGTTGGCATTCTCAGAATTGATGAGGTCGGATTGA 1782 0.4209 MPIPSSSFTNPKSSSSHYPPPPPTPRIRRPRRRPPAGKPTSGEPPRRDWKPKLETLLDGEVDYSYDESVRSRESDGEEKWRVEAEMLRAECNGRIKICEGKDVDAVLKEEIQELTEKLEKLQRRSCAKDSQIRNNSNFDTQVSVHRRRWLDKNGGSSDEVEILRRKMEGLSKGILLQKMEEEYNSTSKRLEFQDLSSVIRAPHQEKVGGEGNMCYGQCKAVVQRIVEEVRAETEQWSLMQEMLGQVREEMEELQASRDFWEDRAINSDYKIQTLHDAVQEWKQRALSSETKANDLEAKLSVLRRDLETFKKEKNNNVQPAKCSPVPSEAQIELEKRILVCYSKENDNHTNADNKYETNEVSITERRRGTHGVGPKRHPFQDIRNSSSLLMRFHPTEQEVMEYLIKKVMNQPYTLPIPEVEVYQHNPEQLTKDYSSMNPGEEEWYFFSQREKLYPKRGVTKRTAPGGYWNTSGTETSVLFGGRTIGHWRTMVFYEGKRQDKPKKPTHWLMREYSLVGSESDDQTCHHRDINMKMDDDWVLCKIYKNGRNYRSRGSSTHHQQNNSDYDQKNSSQMFHGSEWMKKVLAFSELMRSD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4283 593 ProSiteProfiles NAC domain profile. 386 545 IPR003441 GO:0003677|GO:0006355
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 93 159 - -
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 13 92 - -
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 157 391 - -
Sto5g4283 593 Coils Coil 104 124 - -
Sto5g4283 593 Coils Coil 278 312 - -
Sto5g4283 593 MobiDBLite consensus disorder prediction 550 570 - -
Sto5g4283 593 Pfam No apical meristem (NAM) protein 390 514 IPR003441 GO:0003677|GO:0006355
Sto5g4283 593 Coils Coil 243 263 - -
Sto5g4283 593 SUPERFAMILY NAC domain 390 544 IPR036093 GO:0003677|GO:0006355
Sto5g4283 593 Gene3D NAC domain 395 551 IPR036093 GO:0003677|GO:0006355
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 157 391 - -
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 13 92 - -
Sto5g4283 593 PANTHER MYOSIN-LIKE PROTEIN 93 159 - -
Sto5g4283 593 MobiDBLite consensus disorder prediction 1 54 - -
Sto5g4283 593 SUPERFAMILY Tropomyosin 227 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4283 Sto-Chr5 51662712 51669604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4283 390 544 NAC Transcription Factor Family AT1G69490 38.217 1.60e-25 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g4283 NAM 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4283 - - gmx:100795130 344.354