Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4278 ATGTCGCCGGAATGCGACGACGACGACGTCGTCAACATTTCATCCACTCCGGGAGCTTTCAGGCTCAAATGGGACGTATTCTTGAGCTTCAGAGGCGCCGACACTCGCGATTCCCTCACCAGGCATCTCTACGACGCTCTCCTCTCTCGCGGCGTCCGAGTTTTCCGCGACGACGACGGATTAGATCGCGGCGACGAGATCGCGCCGTGTCTTCTAGAAGCCATCGATGACTCCGCGGCTTCGATCATCATCTTGTCTCCGAATTACGCCTCTTCTCACTGGTGTCTCGAGGAGCTCGCCAAGATTTGCGACTGCCGGAGACTCATTCTGCCCGTGTTCTACCGCGTCGATCCCTCACATGTGCGCAAACAGAAGGGTCCGTTTGAGAGATGTTTTGAGATTCATGAGAGTAGGTTTCCGGAAGACGAGGTGATTAGGTGGAGGAAAGCTATGGAGAGAGTGGGGGGAATTGCTGGTTGGGTTTTTCAGAATCACAACTCTAGTGAAGAAGACGTCCTAATTCGACTTTTAGTGAAAAGGGTTCTGAAAGAACTTAGTAATACTCCAATGGGCGTGGCTGAATTTACAGTTGGACTAGAGGGTCGTATTGAAGAATTAACGAACTTGTTAGATTTGAAATCCAATAATGGCCTAAGAGTGTTGGGATTGTTTGGGATGGGTGGGATAGGGAAGACTACCCTTGCAAAGGCTCTTTTCAACTCTCTGGTCACTCATTTTGAGCATCGATGCTTCATTTCAAGTGTCAGACAAGTATCACCCAAACATCTCCTTAACAGAATTGTTAGTGACATTTCTAATGGCAATGGTAATGGTATTTCTGCTTTCAGAAGGACAGTTCATGAGAACAGAGTTCTGATAATCCTAGACGACGTGGATGATCTGAAGCAGCTTGATATGGTAATAGGCGAAAGGGAATGGTTCTATGAAGGAAGCCTTATAGTAATCACCACAAGAGACACACAAGTTTTGCCCGACACTTACGTTAATGTCTTGTACGAGGTGAAGGAATTGGGTAACTCTGAAGCTCTAGAACTGTTCTGTTACCATGCAATGAGAAGAAAGGAACCTTCAGATAATACTCTCTTGAAACTGTCGGAGAAAATGGTGTCTCTCACAGGAAGATTGCCTCTGGCTCTGCAAGTGTTTGGTTCGTTGTTGTTTGGTAAGAGAAGGGTGGAGGAATGGGTTGACATGGTGGAGAAACTCAAGAGGATTCGACCTGGGAATCTTCAGGATGTGTTGAGGATAAGTTATGAGGGATTGGATGAACAAGAGAAGTGTGTGTTCCTTCACGTGGCTTGCTTGTTTGTTCAGATGGGAATGAAGAGAGGAGATGTGGTTGATGTGGTGAGAGGTTGTGGATTGAGGGGAGAGATAGCGATCACGATTCTCACTGAGAAATGTTTGGTCAAAATCAGAGAGGAGGATGATAGTGTTTGCATGCATGATCAAATTAGAGACATGGGAAGGCAGattgttgtggatgaaaatctTGTTGATCCTGGCTTGCGTAGTAGGTTGTGGGATCGATCTGAGATTCTCACTGTTTTGAAGAATCTCAAGGGGACAAGAAGCATTCAAGGGATGGTCCTAGACTTAGAGGAAAGATCTGTTAAAGATAAGGGTGAAGGAATTGGTGGGAATAATAAGCTTCAATGGAGGTCCAGTTTGGGAAATGTGTTGGCATACATAAGCAGCCATAATAATAAGAGATGTTGTGAaaaagacgaagaagaagaggttGTAGTTCACACCAATTGCTTTGAATCAATGACAAACTTGGCACTGCTTCAGATCAATAATTTGAGATTGGAAGGCAAATTCAAGTGTTTCCCTGCAGAATTGAAGTGGCTGCAATGGCAAGGTTGCACTTTGAATTGCATGCCTTCTGACTTTTGGCCACAAGAGCTGGCTGCCCCAAAGAACATAATGGTGATGAACCTCTCCCATTGCTGCCAGCTAGAATCCGTTCCTGATCTATCAGAGTGTACACGTTTAGAGAAGATTGATCTGGAAAACTGCATTAAACTAAATAGGATTCATGAATCAATTGGCAATCTAACCACACTTCGTCATTTGAACCTCACTCGTTGCACTGACCTAATAGAACTACCCACCAACATTTCTGGGCTGAAAAATCTAGAGAACCTCCTCCTCTCTGGCTGCTCAAAGTTCAAAGCTTTACCTACAGACATGACCACCTTCACCTCACTAACAACACTTCTCGCTGATGGCACAGCTTTAACAGAGCTTCCCCACACTATCTTCCGCCTTGAGAAGCTCCAATATCTAGTCCTAGATGGGTGCAAGGATCTCAAAAGGCTACCCCACAACATAGGACACTTGTCCTCTCTGCAAGAACTGACCCTTGACATCTCTGGAATAGAGGAACTACCCAACTCTGTAGGCTGTTTGGAGAACCTTGAGAAGCTCAGTTTGATGCATTGCCAATCTCTCACTGAGATTCCTGATTCTATAGGGAATCTAGCATCACTCTCACAGCTTTGGCTTAATGGTAGTGCAATCAGGGAACTTCCTGCTTCAATTGGTTCCTTGTGTTATCTGAAAGATCTATCAGTGGGAAACTGTAAGCTTCTCAGTGAATTACCTGAGTGTGTCAAGTCTTTTGCTTCTATTGTTGAGCTCCAGCTAGATGGGACAGCAATCACAGATTTGCCAGATGGGATTGGAGGTATGAGGACACTGAGGAGGCTTGATATGAGGAATTGTAGGCATCTCAGATCTTTACCAGAATCTATTGGCCACCTTGCAGCCCTTACAACCTTGAACATTTTCAATGCCAACATCATAGAACTGCCAGAGTCATTTGGAATGCTGGAGAATCTTGTGGTTTTAAGGTTGAACAAATGCAGAATGCTCAGGAAGCTTCCAGATTCTATAGGATGTTTGAAATCTTTGTATCACCTTATGATGGAGGAAACGGGTGTGACAGAGTTACCAGAAAGCTTTGGTATGCTTACAAACTTGAGGACATTGAAAATGGCAAAAAAAAGCCCTGAAAACAAGCAAGATTCTTTTGAAATATCATCATCCTCTTTCTGCAATATGATTTTTCTGACTGATCTGGATGCTCGTGCCTGGGGAATTTATGGGAAAATTCCAGATGGTTTTGAGAAGTTGTCATTTTTGGAAACACTGAATCTAAGCCAAAACAATTTCCATAGCCTTCCTTCGAGTTTGGAAGGGCTTTCCTTTCTCAAAAAACTTGTGCTGCGAAACTGCATCAACCTCCTCTCTCTGCCTCCACTTCCTTCAAGCTTAATAGAAGTGAATGCTGAGAACTGTTGTGCCATGGAAAGCATACATGACCTTTCAAAGTTAAGAAGCTTACAGGAACTGAACCTCACAAATTGTGTAAAAGTGGTGGATATTCCAGGTCTTGAATGGTTGAAATCTATGAGAAGGTTGTACCTTAGTGGATGCATTGCATGCTCCTCCACAATAAGCAAGAGAATTTCCaagGCTGCATTGAGGAATCTAGAGAGCTTGAGCATGCCAGGAACCAGATTACCCAAATGGTTTTCAGGACAAAGTGTGAGCTTTTCCAAGCCCAAGAACCGTGAGCTAACTGGTGTAATTGTGGGCATTGTTGTTTCTATCAACCATAAGATCCCTAATGAGATGCGACCCGATCTTCCTGGAGTGGTTGATGTTCAAGCAAATGTCCTCAAATTGGGCAAAACTGTCTTTACTTCAGTCTTGAACTTACATGGGTTGCCAACCACAAATGACCCACATATACATTTCTGTAGGTACCTTGATTACCATCCTTTGATCTCCTTCTTGCGAGATGGTGACACATTTTGTGTGACCAAGAGAAATCCACCTGTTGATGAGGGGTTAGAGCTTGAAAAATGTGGGGTTCATTTGCTTTTTGAAGGGGATGATGATTATGATGGAGATGAAGATTGTTTGGACACGAGCTTACAATCTGTGTCTGAAAAATTGGCTAAGTTTTTCAGTACTtgcgaagaagaagatgaaattgaGAGCCAAGAGGCATCAGAGATGGAGAGAGAATCATCATCATACATTACCAGTAACTCCACTTGTCTCTCTTTTGTTGGTATATTCGTTCTGATGATGAGTTGTGTTAGAGTCAATCTAGGAATCCTTATGCATGATGGTGTTGTTGATCCTGGTAAGTGTAGTAGATTGTGGGATCGTCTCCAAATCATGGCTGCTTTGAAGAGGATGGTTATGAATATTGGACCAGATCGGTTGGTTCAACTAAAAAATCGGTGA 4287 0.4311 MSPECDDDDVVNISSTPGAFRLKWDVFLSFRGADTRDSLTRHLYDALLSRGVRVFRDDDGLDRGDEIAPCLLEAIDDSAASIIILSPNYASSHWCLEELAKICDCRRLILPVFYRVDPSHVRKQKGPFERCFEIHESRFPEDEVIRWRKAMERVGGIAGWVFQNHNSSEEDVLIRLLVKRVLKELSNTPMGVAEFTVGLEGRIEELTNLLDLKSNNGLRVLGLFGMGGIGKTTLAKALFNSLVTHFEHRCFISSVRQVSPKHLLNRIVSDISNGNGNGISAFRRTVHENRVLIILDDVDDLKQLDMVIGEREWFYEGSLIVITTRDTQVLPDTYVNVLYEVKELGNSEALELFCYHAMRRKEPSDNTLLKLSEKMVSLTGRLPLALQVFGSLLFGKRRVEEWVDMVEKLKRIRPGNLQDVLRISYEGLDEQEKCVFLHVACLFVQMGMKRGDVVDVVRGCGLRGEIAITILTEKCLVKIREEDDSVCMHDQIRDMGRQIVVDENLVDPGLRSRLWDRSEILTVLKNLKGTRSIQGMVLDLEERSVKDKGEGIGGNNKLQWRSSLGNVLAYISSHNNKRCCEKDEEEEVVVHTNCFESMTNLALLQINNLRLEGKFKCFPAELKWLQWQGCTLNCMPSDFWPQELAAPKNIMVMNLSHCCQLESVPDLSECTRLEKIDLENCIKLNRIHESIGNLTTLRHLNLTRCTDLIELPTNISGLKNLENLLLSGCSKFKALPTDMTTFTSLTTLLADGTALTELPHTIFRLEKLQYLVLDGCKDLKRLPHNIGHLSSLQELTLDISGIEELPNSVGCLENLEKLSLMHCQSLTEIPDSIGNLASLSQLWLNGSAIRELPASIGSLCYLKDLSVGNCKLLSELPECVKSFASIVELQLDGTAITDLPDGIGGMRTLRRLDMRNCRHLRSLPESIGHLAALTTLNIFNANIIELPESFGMLENLVVLRLNKCRMLRKLPDSIGCLKSLYHLMMEETGVTELPESFGMLTNLRTLKMAKKSPENKQDSFEISSSSFCNMIFLTDLDARAWGIYGKIPDGFEKLSFLETLNLSQNNFHSLPSSLEGLSFLKKLVLRNCINLLSLPPLPSSLIEVNAENCCAMESIHDLSKLRSLQELNLTNCVKVVDIPGLEWLKSMRRLYLSGCIACSSTISKRISKAALRNLESLSMPGTRLPKWFSGQSVSFSKPKNRELTGVIVGIVVSINHKIPNEMRPDLPGVVDVQANVLKLGKTVFTSVLNLHGLPTTNDPHIHFCRYLDYHPLISFLRDGDTFCVTKRNPPVDEGLELEKCGVHLLFEGDDDYDGDEDCLDTSLQSVSEKLAKFFSTCEEEDEIESQEASEMERESSSYITSNSTCLSFVGIFVLMMSCVRVNLGILMHDGVVDPGKCSRLWDRLQIMAALKRMVMNIGPDRLVQLKNR 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4278 1428 Gene3D Ribonuclease Inhibitor 1017 1198 IPR032675 -
Sto5g4278 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 438 IPR027417 -
Sto5g4278 1428 Gene3D - 183 337 IPR027417 -
Sto5g4278 1428 PRINTS Disease resistance protein signature 220 235 - -
Sto5g4278 1428 PRINTS Disease resistance protein signature 285 299 - -
Sto5g4278 1428 PRINTS Disease resistance protein signature 379 393 - -
Sto5g4278 1428 PRINTS Disease resistance protein signature 692 708 - -
Sto5g4278 1428 ProSiteProfiles Leucine-rich repeat profile. 1056 1078 IPR001611 GO:0005515
Sto5g4278 1428 Gene3D Ribonuclease Inhibitor 570 870 IPR032675 -
Sto5g4278 1428 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 160 IPR035897 -
Sto5g4278 1428 SMART LRR_typ_2 742 765 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 789 812 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 953 977 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 1054 1077 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 930 952 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 836 859 IPR003591 -
Sto5g4278 1428 SMART LRR_typ_2 883 906 IPR003591 -
Sto5g4278 1428 ProSiteProfiles TIR domain profile. 22 185 IPR000157 GO:0007165
Sto5g4278 1428 PANTHER TMV RESISTANCE PROTEIN N-LIKE 21 1294 - -
Sto5g4278 1428 SMART till_3 23 157 IPR000157 GO:0007165
Sto5g4278 1428 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 1294 IPR044974 GO:0006952
Sto5g4278 1428 Pfam NB-ARC domain 201 415 IPR002182 GO:0043531
Sto5g4278 1428 Gene3D - 21 182 IPR035897 -
Sto5g4278 1428 SUPERFAMILY RNI-like 828 1178 - -
Sto5g4278 1428 Pfam TIR domain 23 189 IPR000157 GO:0007165
Sto5g4278 1428 Gene3D - 343 429 IPR042197 -
Sto5g4278 1428 Gene3D Ribonuclease Inhibitor 871 1016 IPR032675 -
Sto5g4278 1428 SUPERFAMILY L domain-like 488 924 - -
Sto5g4278 1428 CDD AAA 197 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4278 Sto-Chr5 51506527 51516821 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4278 24 865 WRKY Transcription Factor Family AT4G12020 27.333 5.08e-66 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4278 - - lang:109340539 1667.9