Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4257 atgatggtgatgatgctTTTGCTGGTAGGGTTCTCTTCTTTGACTTTCTCTGTCAATTTCTGCTCACTTAGTGGAAGAAAGTCATCTATGTTTCAAGATGAAGGGTCGTCTTCTGTAACTTCATCACCTCTTCAGTTTTTCTCAATGATGTCACTTTCACCTAGCTTAGGATCTCCATACCCATGGCTTAGAGAGCTTAAATCCGAGGAAAGGGGTTTGTACCTCATCCATTTGTTGCTCACTTGTGCTAATCATGTAGCTGCTGGTAGTCTTGAAAATGCAAATATCGCTCTTGAACATATTTCCCATCTCGCTTCGCCGGATGGTGATACTATGCAGCGAATTTCTGCTTATTTTACTGAAGCACTTGCTGATAGGATACTTAAAACATGGCCTGGTCTTCACAAAGCTCTTAATTCCACAAGGATAGTCATGGTGTCTGAGGAAATTCTGGTTCGGAAGCTGTTTTTCGAGCTGTTTCCATTTTTGAAGGTAGCTTTTGTTCTTACGAATCAGGCTATAGTTGAAGCAATGGAAGGGGAGAAGATGGTTCATATAATTGATCTCAATGCTGCTGAACCTGCACAATGGATTGCACTCCTGCAAGTTTTGAGCGCCCGGCCTGAAGGTCCTCCTCACTTGAGGATTACTGGCATTCACCAACAGAAAGAGATTCTGGATCAGATGGCTCATAGACTGACTGAAGAAGCAGAGAAGTTGGATATACCATTCCAGTTCAATCTTGTGGTCAGCAAATTAGAGAATCTTGATTTTGACAAGCTTCGTGTGAAAACCGGGGAAGCACTGGCAATCAGTTCAATACTCCAATTGCATTCCCTTTTGACATTGAATGATGAAGCTTTACGGAGAAGATCTCCTCTCTTGTCGAAAGTCTCGAGCGGGAATCATCTTCAAAGAGTCCTGCCAATGAACCAAAGCACATTGGGTGATTTGCTTGAGAAAGACATGATCAACAATGGCTACAGCCCGAGTCCTGACTCAGCCACATCCTCTCCGGCATCTTCAACTGCTTCGAGGAGTATGGAGAGCTTTCTTAATGCCTTGTGGAGTTTATCACCGAAAGTCATGGTTGTAACAGAACAGGACTCCAATCACAATGGTTCCACTCTGATGGAGAGGCTATTAGAAGCTCTGTATTCTTATGCAGCATTGTTTGATTGCTTGGAATCCACAGTCTCAAGAACTTCATTGGAGAGACTGAAGGTGGAGAAGATGCTATTCGGCGAGGAAATCAAGAACATTATTGCGTGCGAAGGAGCCGAAAGGAAGGAAAGGCACGAAAAGCTTGATAAGTGGCTCCAGAGGCTTGATTTAGCTGGGTTTGGGAATGTGCACTTGAGCTATTATGGGATGTTGCAGGCAAGGAGGTTACTTCAGAGCTATGGTTGTGAGGGATACAAGATGAGGGAAGAAAATGGTTGTGTCGTGATTTGCTGGCAGGATAGGTCACTTTTTTCAGTATCAGCTTGGAGATCCAGGAAGTAA 1506 0.4329 MMVMMLLLVGFSSLTFSVNFCSLSGRKSSMFQDEGSSSVTSSPLQFFSMMSLSPSLGSPYPWLRELKSEERGLYLIHLLLTCANHVAAGSLENANIALEHISHLASPDGDTMQRISAYFTEALADRILKTWPGLHKALNSTRIVMVSEEILVRKLFFELFPFLKVAFVLTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVLSARPEGPPHLRITGIHQQKEILDQMAHRLTEEAEKLDIPFQFNLVVSKLENLDFDKLRVKTGEALAISSILQLHSLLTLNDEALRRRSPLLSKVSSGNHLQRVLPMNQSTLGDLLEKDMINNGYSPSPDSATSSPASSTASRSMESFLNALWSLSPKVMVVTEQDSNHNGSTLMERLLEALYSYAALFDCLESTVSRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLDKWLQRLDLAGFGNVHLSYYGMLQARRLLQSYGCEGYKMREENGCVVICWQDRSLFSVSAWRSRK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4257 501 Pfam GRAS domain family 75 498 IPR005202 -
Sto5g4257 501 ProSiteProfiles GRAS family profile. 66 498 IPR005202 -
Sto5g4257 501 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 500 IPR005202 -
Sto5g4257 501 PANTHER SCARECROW-LIKE PROTEIN 3 31 500 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4257 Sto-Chr5 51271936 51273648 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4257 29 501 GRAS Transcription Factor Family AT1G50420 70.332 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto5g4257 GRAS 1.4e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4257 - - tcc:18589932 773.467