Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4252 TTGCAGAGATCACAGGTTGTGTTAGGAGAACTTCTTGTGGTTCTTCTTCAAATGGAGTTCGTGGGCAGAACCGTTAAGAAAGAGGTCCAGGGGGTTGGGATTGTCACGGGAGTAGTGAAATCTTATGATTCAGCATCTGGGTTCGTCGAGATCGTCTATGAAGGTGGTAATTTGGAGGAGCTGGAATCGTCTGAAGTAGCTGCTCTGATACAAGGTGATGAAAGGGAGCTCGTGAAGGTGAAGCGCCCGGTTGGAAGGAAACCCAAAAAACGCCGGCGTGTTGATAGAAAGGATGAAACCAGTGCAAGCCCAGGTAATTCTAGTGAGAATTTGGTGATTTCCATGCCAGATAATTCTGAATTTGGGGGGGTTTTGGATGATGGTGTTTCTGCTAGTGGGAATTTAGAAGTCAATGGTGAATTAGATAGTGGGTTGGAGAAGAGCCCGGGTGTGGGAAATGGGGCGGGAGGAAATTTGATTTTTGGCACTGAAATTATGGGCAATGTGAATTTGAGTGCCAGCTCTAATGGGGGCGTAGAAATTCAATGGAAGGAAATTGATTATGAACAGAGATCGAAAGAAAGTGTATCTACTAATGGGAATTCCAAAATAATGGATTGTGTTAAAGATGGGCTTGATTTGAATGCTAGGCTTAATCTAAACGAGGATTTGGATCTAAATGATGGGTCTAGTTCACTTGTTAATTCTGAGAATGATAAGCAGAGAAGGGGTTGTATTGATTTAAATTTGGATGTGAGTAATGAGATTGACATCAGCCTAAACGTGACTGATTTGAGTTGTTCAGCAGTGGAGAAGTCAAAGCGGGAATGTAATTTTGATTTGAATGTGGAGGTATGTGATGAAGTTAAGGAACCTGAGGGTTATGCTGATGGAGACATACTGTCAGAGGGAGGCGGTTTGTTTGGTAAGATGGGGAAAAGCTTGGAGTCAGAGACAGATATTAATCAAAATTCTGTAGAAGATGGTATTATTAAAAGGaattttgatgatattgaaAGTTCTATCAAATCAGAGGTAATTAATAGTTCCCTTGAGCATGCAGGTAAAGATGCTTCTTTAAGTTTgattgaggaaaatgaagatGGGGTTTACAAAGAAGGTATTGCAGCTATTGACTCTCTTGGGGTTGCAAATGTTCTTTCTGTTAATAATTGTGATTCTATGGAGGCTGAGCAAGAGCATTGTCCTTCTGAACCGGTTATTTCTATAAGCCATGAAGGTCAAGATGAACTTGGAATTGAATGTAAACAAGGTAGTATCCGgaggaagagaagaaaactGTCAGAAAATCTGAAGTTCACCCCAAGGAGGAGTTCTCGCCGGGCTTCTGCTCTAAAACATGATTCAAGCACAGATGATGTATCAATGTCTCCGGTTCCCAGTGCATTAACAGAAGAAAAGACTGTTATTTCTGGTCACAAGCTATATGAACCGTGCAGCATTCTTCCGCCGAAGCTGCAGTTACCCCCTTCTTCTCAAAACTTGAACTTAGATGATATTCCTGTTCTTGATTTATTTTCCATTTATGCCTGTTTGAGGTCGTTCAgtactatattatttttaagtccATTTGAGTTGGAGGATTTCGTAGCTGCACTGAACAGCAAAAGtcctaatatattatttgacaaCATTCATGTTTCTGTTTTGCAAACTCTTAGAAAGCACTTGGAATACCTTTCCAATGAGGGTTGTGAGTCTGCTTCCAATTGCCTGAGAAGTTTGAACTGGGATTGGTTGGACCTGGTTACGTGGCCCATTTTTATGGCTGAGTACCTTCTGATTCATGGTTTGGGACTTAAAACTGGTTTTGAGATCAAGCATTTGATGTTCAGAGGTGACTACCACAAGCAGCCTGTAACTGTGAAGATTGAAATTCTTCAATGCCTTTGTGATGATATGATTGAAGTGGAAGCCATACGGTTGGAGCTTAACAGAAGATCTTTGGTAACTGAGACTGATATGAGTTTTGACCAGAGCATGTATTTTGACATTGGCAAAAAGAGGAGAGCTGTAATGGATGTGTCCGGTGGCTCATGTCTGGCTGAGGAGATTGTTGATGACACAACTGATTGGAACAGTGATGAATGCTGCCTTTGCAAGATGGATGGAAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGGTGTGTTGGAATTGCAAGTGACCATTTACCTGAAGGTGACTGGTATTGCCCTGAGTGTGCAATTGCTAGACATAAACCTTGGATGAAAGCACAAAAATCACTTCGAGGAGCAGACCTTCTAGGAATTGATCATCATGGCCGTCTTTATTTTCATAGCTGTGGTTACCTGTTAGTGTCAGATTCATCCAACATGGGATCCTTGTTCAATTACTACCACAGAAATGATCTACATGTTGTAATTGAAGTGCTAAAATCCGCAGATGATTTCTATGGTGGCATATTAATGGCAATCTACAAGCATTGGGATATTCCTTTTAACTCAAATGGTGAAGCTAGTAAGTTGGAAGTCTTAAATCAAAATGCTGGCGAAAACATGCATATGAAGGCAGAATACTCTGCTATATATTCATCCTTAGCACCTTTCACATCTTCAGAAACATCCTTGGAGAAGAATCAGGCTGATGATCAAAAGAAGGTTGAAGATAATTCTACTGTTGCAAGTTGTATCCAACCTGGCCAAGAATTTCTTAAAGCTGGGAATCAGTTAGATTCAATGAAAACAATAGTAAGTCCTTGTGTTGTTGCTTCAGAAGGATCTGATGATACTACACAAATGAGATCAGCTTCTGACAATATTTTAAGACATGGACCCCAAGATTCCAATAGATCTGATGGGTCCTTGAATCAGTCAAGAGTTGACTACATAAACTATTACAGCTTTGCTCGAACGGCCTCGTTAGTGGCAGAGGAGTTGATGTGTAAATCATCTGAAAAGATCAATAAGAACTCTGTAACGTCTGAAGAAGACTTAATCTCAGGACAAGCAAAGACAATTGTTAAGAAATCTACAAACTTTTACTGGCCAAGTTCTCAAAATGTAAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCCTTTTTTGCAAAGCTGAAAATGATGACAGAGATTGCTTGTTTAACACTTTGGTGAGGCCTGTTCGGGAAGTGTCTAAAAGTAATTTGGTTGGGCTTCAACCTAAGAAGAACCAGAATGCCCATCTTAGAGATGTCATATGTTATATTCTCTCCCTTGAGGATCGATTACGTGGGCTTCTGTCAGGGCCATGGTTGAATCTCCATCATTCTACGAATTGGCGTAAAGATCTTCTAAATGCATCTGATGTTGCATCTGTTAAATGCTTATTGCTCACTTTAGAATCCAATTTGCGGCTTCTTGCACTTTCGGCAGATTGGTCAAAACATGTGGATTCTATTGTTACCGTGGGTTCAGCTTGTCATATTGTACCCAGTTCATCACGCACATCATCAAGGCATAatattggaaggaaaaggaCTAGGTGTTCAGATATTGAGTCCAACTCATCTTCTAACACAAGTGGTTATTGGTGGAGAGGTGGTAGGCTTTCTCGTCATTTGTTTAATTGGAAGGTTTTGCCTTGCTCCTTGGTCACCAAGGCAGCTAGACAAGCTGGGTGTACAAAGATTCTAGGTGTACTATATCCTGAGAATTCAGATTTTGCAAGGAGAAGCAAATGTGTCGCTTGGCGTGCTGCCGTTGAGACATCAATTAGTGTTGAGCAGCTTGCTATCCAGGTTAGGGAGCTTGATTCTAACATTAGGTGGCACGACATTGAGAATACTCATCCTCTATATGCATTGGACAAGGAATCTAGAAAGTCAATCAGACTGTTCAAAAAAGTTACTGTACGCAGGAAGTGCAACGAAAAGGAATCTGCAAAGTATCTTCTTGATTTTGGGAAGAGAAGGGCTGTTCCAGATGTTGTTATGAAACATGGTTCTTTGTTGGAACAATCCTCAAGTGACAGGAAAAAATATTGGCTGGATGAATCTTATGTTCCCCTGCATCTTATAAAGAATTTTGAGGACAAAAAGATTGCCCGCAAGTCCAATGAAATAAAAACAGGAAAAGTTCTAGAGACTAGtggattaaataataaagttactAAAAAACGGGGATTTTCCTATTTGTTTTCTAGGATGGAAAGATCTGACTATCATCAATGTGGTCACTGCAACAAAGATGTTCCAATCAGGCATTTTGGTTTAGTCATGATTGTTATGGAGATCTCAAGATACTTGGTTTATGAGAGTTGA 4293 0.3953 LQRSQVVLGELLVVLLQMEFVGRTVKKEVQGVGIVTGVVKSYDSASGFVEIVYEGGNLEELESSEVAALIQGDERELVKVKRPVGRKPKKRRRVDRKDETSASPGNSSENLVISMPDNSEFGGVLDDGVSASGNLEVNGELDSGLEKSPGVGNGAGGNLIFGTEIMGNVNLSASSNGGVEIQWKEIDYEQRSKESVSTNGNSKIMDCVKDGLDLNARLNLNEDLDLNDGSSSLVNSENDKQRRGCIDLNLDVSNEIDISLNVTDLSCSAVEKSKRECNFDLNVEVCDEVKEPEGYADGDILSEGGGLFGKMGKSLESETDINQNSVEDGIIKRNFDDIESSIKSEVINSSLEHAGKDASLSLIEENEDGVYKEGIAAIDSLGVANVLSVNNCDSMEAEQEHCPSEPVISISHEGQDELGIECKQGSIRRKRRKLSENLKFTPRRSSRRASALKHDSSTDDVSMSPVPSALTEEKTVISGHKLYEPCSILPPKLQLPPSSQNLNLDDIPVLDLFSIYACLRSFSTILFLSPFELEDFVAALNSKSPNILFDNIHVSVLQTLRKHLEYLSNEGCESASNCLRSLNWDWLDLVTWPIFMAEYLLIHGLGLKTGFEIKHLMFRGDYHKQPVTVKIEILQCLCDDMIEVEAIRLELNRRSLVTETDMSFDQSMYFDIGKKRRAVMDVSGGSCLAEEIVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDHLPEGDWYCPECAIARHKPWMKAQKSLRGADLLGIDHHGRLYFHSCGYLLVSDSSNMGSLFNYYHRNDLHVVIEVLKSADDFYGGILMAIYKHWDIPFNSNGEASKLEVLNQNAGENMHMKAEYSAIYSSLAPFTSSETSLEKNQADDQKKVEDNSTVASCIQPGQEFLKAGNQLDSMKTIVSPCVVASEGSDDTTQMRSASDNILRHGPQDSNRSDGSLNQSRVDYINYYSFARTASLVAEELMCKSSEKINKNSVTSEEDLISGQAKTIVKKSTNFYWPSSQNVNAAAQKEKCGWCLFCKAENDDRDCLFNTLVRPVREVSKSNLVGLQPKKNQNAHLRDVICYILSLEDRLRGLLSGPWLNLHHSTNWRKDLLNASDVASVKCLLLTLESNLRLLALSADWSKHVDSIVTVGSACHIVPSSSRTSSRHNIGRKRTRCSDIESNSSSNTSGYWWRGGRLSRHLFNWKVLPCSLVTKAARQAGCTKILGVLYPENSDFARRSKCVAWRAAVETSISVEQLAIQVRELDSNIRWHDIENTHPLYALDKESRKSIRLFKKVTVRRKCNEKESAKYLLDFGKRRAVPDVVMKHGSLLEQSSSDRKKYWLDESYVPLHLIKNFEDKKIARKSNEIKTGKVLETSGLNNKVTKKRGFSYLFSRMERSDYHQCGHCNKDVPIRHFGLVMIVMEISRYLVYES 1430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4252 1430 MobiDBLite consensus disorder prediction 443 467 - -
Sto5g4252 1430 ProSiteProfiles DDT domain profile. 506 566 IPR018501 -
Sto5g4252 1430 SMART PHD_3 703 746 IPR001965 -
Sto5g4252 1430 Pfam PHD-finger 704 746 IPR019787 -
Sto5g4252 1430 ProSitePatterns Zinc finger PHD-type signature. 704 745 IPR019786 -
Sto5g4252 1430 ProSiteProfiles Zinc finger PHD-type profile. 701 748 IPR019787 -
Sto5g4252 1430 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 18 1411 - -
Sto5g4252 1430 Pfam DDT domain 509 562 IPR018501 -
Sto5g4252 1430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 763 IPR013083 -
Sto5g4252 1430 MobiDBLite consensus disorder prediction 82 116 - -
Sto5g4252 1430 CDD PHD1_AIRE 703 745 - -
Sto5g4252 1430 SUPERFAMILY FYVE/PHD zinc finger 689 749 IPR011011 -
Sto5g4252 1430 SMART testlast3 506 566 IPR018501 -
Sto5g4252 1430 PANTHER PHD FINGER FAMILY PROTEIN 18 1411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4252 Sto-Chr5 51218677 51227449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4252 18 1410 PHD Transcription Factor Family AT5G12400 41.898 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sto5g4252 DDT 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4252 - - gmx:100800973 1670.6