Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4241 TTGGATAAACCTTCAACTTCAAGGTCTCTTTCTTTTAATAAGGTTCTGTTTCCTTCATCAACAAAAGCAACAAATTCATTACCAGTCACACCAGTTGCATATTCAGCCTCACAGACTGTAGGTGGAAGACATCTAGGAAGTGAGATTGACTTAAGTAAAATGGAAGTCAAGAACCACATGACTCGATCATTTTCAGTTCCAGTTAATGTCAAAGCCTCTGGTTTAAAGCGTACAGATTCTAGGGGTTTGATCCGAGTAATTTCAGCAAAATCACATCCTGCAGCTGTTGATGGCCATTCAACCAATAATGCTTTAGGGCCAGAGATTGTTATTGAAGATGCTACCCAGGACATTCCTGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTAGGGGAAGGTGGAGATAGTCTTAAGATGGAGTGCAGTTGTAAAGGTGACCTTGCGCTTGCTCACCAAGAGTGTGCAGTAAAGTGGTTTAGTATAAAAGGAAACAAGACTTGTGATGTTTGCAAGCAGGATGTTCGAAACCTCCCAGTGACACTTTTGAAAATCCACAGTCCTCAAATTGATATTAGACGTCCACCAAATACCCAACATCAAATAGAAGCTGCCAATTACAGGCAAGTATAA 636 0.4072 LDKPSTSRSLSFNKVLFPSSTKATNSLPVTPVAYSASQTVGGRHLGSEIDLSKMEVKNHMTRSFSVPVNVKASGLKRTDSRGLIRVISAKSHPAAVDGHSTNNALGPEIVIEDATQDIPEEEAVCRICLVELGEGGDSLKMECSCKGDLALAHQECAVKWFSIKGNKTCDVCKQDVRNLPVTLLKIHSPQIDIRRPPNTQHQIEAANYRQV 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4241 211 CDD RING_CH-C4HC3_MARCH 125 173 - -
Sto5g4241 211 SMART ringv_2 124 173 IPR011016 GO:0008270
Sto5g4241 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 180 IPR013083 -
Sto5g4241 211 SUPERFAMILY RING/U-box 121 176 - -
Sto5g4241 211 Pfam RING-variant domain 125 172 IPR011016 GO:0008270
Sto5g4241 211 PANTHER OS02G0165000 PROTEIN 3 209 - -
Sto5g4241 211 ProSiteProfiles Zinc finger RING-CH-type profile. 117 179 IPR011016 GO:0008270
Sto5g4241 211 PANTHER OS02G0165000 PROTEIN 3 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4241 Sto-Chr5 51129596 51132004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4241 108 179 C3H Transcription Factor Family AT2G37950 49.333 6.16e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4241 - - mnt:21400706 290.041