Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4238 ATGAGTACTACTAAAGAAAACGAGGAAGCTGGCCAGAATGCGGCGGTGGGTGTGGATGAAAGCATGGTTGATGCACAGGTTCAACTTGAAGAGGCTTCTTCTGTTCCCGTACCAGTAGAGAAAACTTCAAATCATGTTGAAAATGTGATGCTAGAGGCACCTGCTGGTGATAATAATCAAGAACCTGAGGCAACGGCCGAGGGTACTCCACAAGAAGTAGTTCAACATTCTCTTGTCTCTGTCCCAGTAGAAGCCAATGATCAAGTTTTGGTTAAAACCGACTTGGAAAACACTTCAGATGCGAAGAGTGAAGTCAAAGAATTTCGACAGAGAAGTACGACCATTGAGAGTGATGCCGTTGTTAGTGAGAAGGTTGTTGACACTGCTGAAACAGTTGCGAATGTCAAGCCTGAAGCTTGTGAAGTGGGTTCCAATAACGCTTGCAGCAATGTTGATTCAGTACCCACGAGTCATAATGAACCTACAACACCACAAGTTATTCCTGCTGATACAAAAGCCGAAACTGTGAATGGAGTAAAATTTGAGACTAAGGTTAATGAGGAGCAGCCTGCCACGCCTGCAGATAATGGGATTTCAAACACAAAGCTCTCATTTTTGGAAGTTAATTATAATGGGAATGATTCAGGAACAGAAGCGGAGCAATCAGCTTTTATGAAGGAGCTTGAAAATTTCTTTAGGGAGAGGAGCATGGAATTTAAACCTCCTAAGTTCTATGGAGAGGGGCTTAACTGTCTAAAGTTGTGGAGAGCTGTGACCAGATTGGGTGGCTATGATAAGgtaacttcATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACGACAGTTTCATGGACATTTCGAGGTTTTTATGAAAAGGCACTTCTTGATTATGAAAGGCATAAAACAAAAGGTGGTGAGCTTACTGTGCCCATTGCTCCTCATTCAGAGCctataaatattgaaaatcagTCCTTTTTGCCTAATGAGTGTAATCAGGCTTCAGCATCAGGTAGGGCGAGGAGAGATGCTGCAGCACGGGCTATGCAAGGTTGGCATTCACAACGTCTTCTTGGTAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGACTTCTCTGCCTATGCAGAAACGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCACGGAGTAAACCATCTAAGCCACAATTGGATACAGCAGTTGTTGATGTTGGACCTCCTGCTGATTGGGTAAAAATCAATGTTCAAAAAACTAAAGATTGTTTTGAGGTCTACGCACTAGTTCCTGGCCTACTGCGAGAAGAGGTAACCAATATTCTCCTTGGTTTGTCTTTCTTCTACCGTCCCCTCTGTTTTTCTGGGAGTTACAATGTGGTGCGTGTTCAATCAGATCCAGCAGGACGATTGGTCATTAGTGGTGAGCCAGAGCATCCCGATAATCCTTGGGGTGTGACTCCTTTCAAAAAGGTTGTGAGCTTGCCGTCAAGAATTGATCCTCATCAAACATCAGCTGTGGTGACATTGCATGGACAACTTTTTGTGCGTGTCCCGTTTGAGCAATCGGAATAG 1635 0.4287 MSTTKENEEAGQNAAVGVDESMVDAQVQLEEASSVPVPVEKTSNHVENVMLEAPAGDNNQEPEATAEGTPQEVVQHSLVSVPVEANDQVLVKTDLENTSDAKSEVKEFRQRSTTIESDAVVSEKVVDTAETVANVKPEACEVGSNNACSNVDSVPTSHNEPTTPQVIPADTKAETVNGVKFETKVNEEQPATPADNGISNTKLSFLEVNYNGNDSGTEAEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIAPHSEPINIENQSFLPNECNQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSLPMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDVGPPADWVKINVQKTKDCFEVYALVPGLLREEVTNILLGLSFFYRPLCFSGSYNVVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4238 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 481 543 - -
Sto5g4238 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 6 458 - -
Sto5g4238 544 Pfam ARID/BRIGHT DNA binding domain 221 305 IPR001606 GO:0003677
Sto5g4238 544 CDD ARID 220 305 - -
Sto5g4238 544 SMART bright_3 219 310 IPR001606 GO:0003677
Sto5g4238 544 ProSiteProfiles ARID domain profile. 218 309 IPR001606 GO:0003677
Sto5g4238 544 CDD ACD_sHsps-like 436 539 - -
Sto5g4238 544 Gene3D - 218 315 IPR036431 GO:0003677
Sto5g4238 544 SMART ARID_2 215 305 - -
Sto5g4238 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 6 458 IPR045147 GO:0006357
Sto5g4238 544 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 481 543 IPR045147 GO:0006357
Sto5g4238 544 SUPERFAMILY ARID-like 211 322 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4238 Sto-Chr5 51082956 51087017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4238 213 542 ARID Transcription Factor Family AT1G76510 59.394 2.93e-125 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto5g4238 ARID 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4238 - - gmx:100791081 709.523