Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4222 ATGGTGAAGTTTCTGAAGCCAAACAAAGCCGTCATCGTCCTCCAAGGACGCTATGCTGGTCGCAAGGCCGTGATAATCCGTACATTCGACGACGGAACTCGCGACCGCGCTTACGGCCACTGCTTGGTCGCCGGCGTCAAGAAATACCCTAGCAAGGTAATCCGGAAGGATTCCGCCAAGAAGACGGCGAAAAAGTCTCGCGTCAAGGCCTTCGCGAAGCTAGTGAACTACCAGCACTTGATGCCCACGCGATACACGCTCGACGTGGATCTCAAAGACGTGGTCTCCGTTGACGCTCTTCAGTCGAAGGACAAGAAGGTCACGGCCTTGAAGGAGACGAAGAAGAGGTTCGAGGAGAGGTTCAAAACCGGCAAGAACAGGTGGTTCTTTACCAAGCTTAGTGTCTATAGTGTCTCTCTGGCTATTTATTACTGCAGTTTGATGTAA 447 0.5213 MVKFLKPNKAVIVLQGRYAGRKAVIIRTFDDGTRDRAYGHCLVAGVKKYPSKVIRKDSAKKTAKKSRVKAFAKLVNYQHLMPTRYTLDVDLKDVVSVDALQSKDKKVTALKETKKRFEERFKTGKNRWFFTKLSVYSVSLAIYYCSLM 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4222 148 SUPERFAMILY Translation proteins SH3-like domain 2 133 IPR008991 -
Sto5g4222 148 Pfam Ribosomal L27e protein family 52 133 IPR001141 GO:0003735|GO:0005840|GO:0006412
Sto5g4222 148 Coils Coil 100 120 - -
Sto5g4222 148 Gene3D - 1 135 IPR038655 -
Sto5g4222 148 CDD KOW_RPL27 6 88 IPR041991 -
Sto5g4222 148 PANTHER 60S RIBOSOMAL PROTEIN L27 1 133 - -
Sto5g4222 148 SMART kow_9 4 31 IPR005824 -
Sto5g4222 148 PANTHER 60S RIBOSOMAL PROTEIN L27 1 133 IPR001141 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4222 Sto-Chr5 50972190 50973552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4222 1 133 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 85.714 1.07e-81 235