Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4220 atgGGTACTAATAGTGACTCTGCTAAAGATACTCTTCCACAACGGAAGACTATCTCGCCTTATGACCTCCCTTCTCTTGACAACCCGGGATTGGCAATTACCCAAGTTCAATTAAGAGGAGAGAATTATGACGAATGGGCTCAAGCAGTTAAGACGGCTTTGAGGGCTCGGAAGAAGTTCGGCTTCGTTGATGGAAAAATCGCTCAACTTGCTGAGGATTCATCTGATTTTGAAGACTGGTGGACCATCAATTTCTTATTGGTTTCATGGATCCGGAACAGCATAGAACCATCGTTGCGTTCTACTATTTCCAAGAAGGACGTAGCGAAGGATTTGTGGAACGAAATCAGAGACAGATTCTCCGTAACAGATGGAACACGAATTCAACAATTGCGTTCTGCTCTTACAGAATGCAAGCAAAGGGGACTCACCATAGTTGACTACTATGGAAGGCTAACAAAACTGTGGGATGAATTATCGAATTATGATCCCATACCAACGTGCAAGTGCGGCAAGTGCACTTGTGATCTCTCGACCATGTTGAACAAGAAGCGGGAAGATGAACGGGTTCATACGTTTCTTTTGGGGTTAGATGACACCCTGTACGGCACGGTACGTTCGTCCATTCTGACCCAAGACCCGCTTCCTAACTTGCATAAAGTGTATTCCATTCTAGTTCAGGAGGAGCGAGTCAAGACTATAGCTCGAGCTAAGGAGGACCGTGTTGAGGTAATGGCTTTTGCAACACGGACCCGATCCGACGGACGCGATAAAACACTGGTATGCTCACACTGCAACAAGAATGGGCATGAGGCAGAGAATTGCTTTGCTTTGATCGGTTACCCTGAATGGTGGGGAGACAGAGCTCGACACGATGGGAAAGCCACAGCCACATCACTCGACCCCAATATCATTCATGATGCATCCCACATGATTGAAGATACATCCACCATAATGGGTCGTGGATGCCGTCGGAAAGAGACCTCAGTACGACTTCGTGATTTTGTCACTCATACCATCAAGACAATGAGTCCATCTTTGCCACTACCACTTGCACCACAGCGTTCTTCAGCTGCTAAAACTGCCATTGCtgaatttttcttgttttgtttcgCGCAGACGAAGCTGGAAGCGTACGAGATACGATCGCATTCCGTAATGGCGTCGTTTCTAATGAAGCTTGGGATTATTTTATCGGTTCTTTTGCTTCTGTTTTCTCCGTCGCAATCTGCGGTTTTTAGTGTAGATCTAGGGTCTGATTGGCTCAAAGTGGCGGTTGTTAATCTTAAACCTGGACAGAGTCCTATTTCAATAGCAATCAATGAGATGTCGAAGCGGAAATCTCCGGCCTTAGTTTCATTTCATTCCGGAGATCGCCTGCTAGGTGAAGAAGCAGCTGGTCTAGTGGCTCGGTATCCTCAAAATGTCTATTCTCAGATCAGGGACTTGATTGGAAAACCGTATAGTTTTGCCAAGAAGTTTTTGGATTCTTTGTACTTGCCATTTGAAATCAAGGAAGATTCAAGGGGCAGCGTGAGTTTCAAAGTTGATGATAATGGCACAGAGTATTCTGCTGAGGAATTGGTGGCGATGGTTTTGACCTATGCTGTGAATTTAGCGGAATTCCATTCCAAAGTTCCTATCAAAGATGCCGTAATAACGGTTCCTCCTTACTTTGGGCAAGCTGAACGAAACGGATTGCTTCAGGCAGCACAATTGGCTGGAATTAATGTTCTTTCTTTGATAAACGAGCATTCTGGTGCTGCATTACAGTATGGGATTGACAAGAATTTCTCAAATGAGTCAAGGCATGTTATATTCTACGACATGGGTTCCAGCAGTACTTATGCCGCTCTTGTGTATTTTTCAGCGTACACAAGCAAAGAATACGGAAAGACAGTGTCAGTTAACCAGTTTCAGGATTATGTTTATGTCTTCATCCTGAACCCTGCTGCTTTTCTCTTGGTTAAGGATGTCCAATGGAATCCAGAGCTGGGAGGACAGGATATGGAATTGCGATTGGTGGAGTACTTTGCTAATGAATTTAATAAGCAAGTTGGTGATGGATTTGATGTGAGAAAGTTTCCCAAGGCAATGGCTAAATTAAAGAAACAGGTTAAACGAACCAAAGAAATTCTTAGTGCTAACACTGCTGCTCCAATTTCAGTTGAATCACTTCATGGAGACATGGACTTTAGGAGTACTATTACCCGTGAGAAGTTTGAGGAGCTCTGTCAGGATATCTGGGAAAAATCTGTTTTGCCTGTGAAAGAGGTGCTTGAGAATTCAGGCTTCACAGCAGACCAAATATATGCAGTGGAGTTACTAGGAGGTGCTACCAGAGTGCCAAAATTACAGGCTAAGCTTCAAGAGTTCCTTGGAAGGAAAGAACTTGACAGACATCTTGACTCTGATGAAGCTATAGTTCTAGGTGCAGCACTCCATGCTGCAAATTTAAGTGATGGAATTAAATTGAACCGTAAGCTGGGAATGGTGGATGGTTCAATGTATGGATTTGTGGTTGAGTTAAATGGTCCTGATCTTTCGAAAGATGAAAGCACTAGGCAGTTACTTGTACCACGACTGAAGAAAGTCCCTAGTAAGATGTTCAGATCCATTGTCCATAATAAAGATTTTGAAGTTTCACTAGCTTATGAGAGTGAAAAGCTTTTGCCACCTGGTGTTACCTCTCCTGAAGTGGCCCAATATCAAATATCTGGTTTGACAAATGCAAGTGAGAAGTACTCATCTCGAAATTTGTCGTCACCCATAAAGGCAAACCTACATTTCTCTCTAAGTAGAAGTGGTATTCTTTCTTTGGATCGGGCAGATGCTGTCATTGAAATATCTGAGTGGGTCGAAGTTCCTAAAAAGAATCTAACCATAGAGAATTCTACTTCTGATTCTTTAAACTTGTCAATGGAAACTGGTGGTAGAAATAGTTCTGAGGAAAGCAATGAAAACTTGCACACTGATGAAGGGATTAGTAAGACATTGAATGTTAGTACAGATGAGCAAGCTACTGCAGATACTGTTACTGAGAAAAAGCTGAAGAAGCGAACCTTTAGGGTTCCTTTGAAGATTGTTCCGAGAATGGTGGGATCTGGAATGTCTCTATCAAAAGAGTTTCTTGCTGAAGGTAAAGGCAGATTAGAAGCATTGGACAAAAAAGATGCCGAAAGAAGAAGAACAGCAGAATTGAAAAATAACTTAGaaggatatatatattcaactaaGGATAAGATTGAAACTTCAGAGGATTGTGCTAAAGTTTCTACCAGTGAAGAACGTCTGTCCTTTGTTGAGAAGCTTGATCAGGTGCAAGATTGGTTGTATACTGATGGTGAAGATGCCAATGCTACAGAGTTTCAAGAGCGTCTAGATATGTTAAAAGCAGTTGGTGATCCAATTTTCTTCAGGTTGAAGGAGCTCACAGCTCGACCAATGGCGGTTGATCATGCTCGGAAATACCTTAAAGAGTTGCCACAGATTGTAGAAGGGTGGAAGACAAATAAATCTTGGCTTCCCAAAGAACAAATTGATGAGGTTGTAAAGGATGCCGAAAAGTTAAAGAATTGGTTGGATGAGAAGGAGAGTGAGCAAAAGAAGACTTCTGAATTTAGCAAGCCAGCATTTACTTCTGACGAAGTATATCTGAAGGTGCTTGATCTGCAAAGCAAGGTTGCCAATATCAATagaatccccaaacccaaacctaaaATCCAGAAGCCTACAAAGAATGAAACTGACGGCAGTAAGCAGAACACGGACGATACTAACTCCACCTCAACCGATAGTTCTCCCGAAAGCGATCAACCAGCTGACAACAACTCAGAAGGCTCAAAAGATGAAACTGTTGATGAGCAAGGTCATGATGAAAAACTCTCAAGTGATCTCTTCATAGAAAGGCCTCCATGA 3918 0.4201 MGTNSDSAKDTLPQRKTISPYDLPSLDNPGLAITQVQLRGENYDEWAQAVKTALRARKKFGFVDGKIAQLAEDSSDFEDWWTINFLLVSWIRNSIEPSLRSTISKKDVAKDLWNEIRDRFSVTDGTRIQQLRSALTECKQRGLTIVDYYGRLTKLWDELSNYDPIPTCKCGKCTCDLSTMLNKKREDERVHTFLLGLDDTLYGTVRSSILTQDPLPNLHKVYSILVQEERVKTIARAKEDRVEVMAFATRTRSDGRDKTLVCSHCNKNGHEAENCFALIGYPEWWGDRARHDGKATATSLDPNIIHDASHMIEDTSTIMGRGCRRKETSVRLRDFVTHTIKTMSPSLPLPLAPQRSSAAKTAIAEFFLFCFAQTKLEAYEIRSHSVMASFLMKLGIILSVLLLLFSPSQSAVFSVDLGSDWLKVAVVNLKPGQSPISIAINEMSKRKSPALVSFHSGDRLLGEEAAGLVARYPQNVYSQIRDLIGKPYSFAKKFLDSLYLPFEIKEDSRGSVSFKVDDNGTEYSAEELVAMVLTYAVNLAEFHSKVPIKDAVITVPPYFGQAERNGLLQAAQLAGINVLSLINEHSGAALQYGIDKNFSNESRHVIFYDMGSSSTYAALVYFSAYTSKEYGKTVSVNQFQDYVYVFILNPAAFLLVKDVQWNPELGGQDMELRLVEYFANEFNKQVGDGFDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLHGDMDFRSTITREKFEELCQDIWEKSVLPVKEVLENSGFTADQIYAVELLGGATRVPKLQAKLQEFLGRKELDRHLDSDEAIVLGAALHAANLSDGIKLNRKLGMVDGSMYGFVVELNGPDLSKDESTRQLLVPRLKKVPSKMFRSIVHNKDFEVSLAYESEKLLPPGVTSPEVAQYQISGLTNASEKYSSRNLSSPIKANLHFSLSRSGILSLDRADAVIEISEWVEVPKKNLTIENSTSDSLNLSMETGGRNSSEESNENLHTDEGISKTLNVSTDEQATADTVTEKKLKKRTFRVPLKIVPRMVGSGMSLSKEFLAEGKGRLEALDKKDAERRRTAELKNNLEGYIYSTKDKIETSEDCAKVSTSEERLSFVEKLDQVQDWLYTDGEDANATEFQERLDMLKAVGDPIFFRLKELTARPMAVDHARKYLKELPQIVEGWKTNKSWLPKEQIDEVVKDAEKLKNWLDEKESEQKKTSEFSKPAFTSDEVYLKVLDLQSKVANINRIPKPKPKIQKPTKNETDGSKQNTDDTNSTSTDSSPESDQPADNNSEGSKDETVDEQGHDEKLSSDLFIERPP 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4220 1305 Gene3D - 415 817 - -
Sto5g4220 1305 MobiDBLite consensus disorder prediction 1254 1275 - -
Sto5g4220 1305 Pfam gag-polypeptide of LTR copia-type 26 68 IPR029472 -
Sto5g4220 1305 Gene3D Actin; Chain A, domain 4 666 751 - -
Sto5g4220 1305 Pfam Retrotransposon gag protein 89 198 IPR005162 -
Sto5g4220 1305 Gene3D - 478 531 - -
Sto5g4220 1305 MobiDBLite consensus disorder prediction 1231 1305 - -
Sto5g4220 1305 Gene3D - 1041 1151 IPR029048 -
Sto5g4220 1305 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 827 968 IPR029047 -
Sto5g4220 1305 SUPERFAMILY Actin-like ATPase domain 602 819 IPR043129 -
Sto5g4220 1305 PANTHER BNAC07G50110D PROTEIN 396 1274 - -
Sto5g4220 1305 Pfam Hsp70 protein 656 1139 IPR013126 GO:0005524|GO:0140662
Sto5g4220 1305 Pfam Hsp70 protein 413 622 IPR013126 GO:0005524|GO:0140662
Sto5g4220 1305 MobiDBLite consensus disorder prediction 966 984 - -
Sto5g4220 1305 PRINTS 70kDa heat shock protein signature 411 424 - -
Sto5g4220 1305 PRINTS 70kDa heat shock protein signature 443 455 - -
Sto5g4220 1305 PRINTS 70kDa heat shock protein signature 551 571 - -
Sto5g4220 1305 PRINTS 70kDa heat shock protein signature 770 786 - -
Sto5g4220 1305 PRINTS 70kDa heat shock protein signature 802 822 - -
Sto5g4220 1305 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 1066 1148 IPR029048 -
Sto5g4220 1305 Gene3D - 597 799 - -
Sto5g4220 1305 PANTHER HSC70CB, ISOFORM G-RELATED 396 1274 - -
Sto5g4220 1305 MobiDBLite consensus disorder prediction 966 996 - -
Sto5g4220 1305 CDD HYOU1-like_NBD 414 817 - -
Sto5g4220 1305 Coils Coil 1180 1200 - -
Sto5g4220 1305 MobiDBLite consensus disorder prediction 1276 1305 - -
Sto5g4220 1305 SUPERFAMILY Actin-like ATPase domain 412 596 IPR043129 -
Sto5g4220 1305 ProSitePatterns Heat shock hsp70 proteins family signature 3. 773 787 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4220 Sto-Chr5 50940549 50959535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4220 408 889 Calmodulin-binding Proteins AT3G12580 29.857 7.86e-61 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4220 K09486 - gmx:100786898 1369.76