Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4218 ATGGAGAACTCGAGTGAGAAGAAGAACGAGAAGCAGGGGATGATTCAAGACTTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTCTGAAATTTTCCAAGAAGCTATCGAGCTGTCTATTCTATGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGCTAATGCCATAATTAAACGATATACTTCTACAAACGCCAATACCATCATCAAAAAAGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGGATAAGCAACGTGACTTGGATGCTCAAGTGGAAGCAGAGAAAATTTTCATTCACCTCTTGTTCCAATATATGATGGATAAGAGTTTAGAAATCTATAAataa 417 0.4053 MENSSEKKNEKQGMIQDFEARNAAFLKLKSEIFQEAIELSILCGAELAIFLASPSGEIHCFANPSANAIIKRYTSTNANTIIKKEGDSPSCSSMSHSQTLTDCDKDKQRDLDAQVEAEKIFIHLLFQYMMDKSLEIYK 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4218 138 ProSiteProfiles MADS-box domain profile. 15 65 IPR002100 GO:0003677|GO:0046983
Sto5g4218 138 MobiDBLite consensus disorder prediction 84 99 - -
Sto5g4218 138 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 11 119 - -
Sto5g4218 138 Coils Coil 1 21 - -
Sto5g4218 138 SUPERFAMILY SRF-like 12 84 IPR036879 GO:0003677|GO:0046983
Sto5g4218 138 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Sto5g4218 138 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Sto5g4218 138 PANTHER MADS BOX PROTEIN 11 119 - -
Sto5g4218 138 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677|GO:0046983
Sto5g4218 138 SMART madsneu2 4 64 IPR002100 GO:0003677|GO:0046983
Sto5g4218 138 MobiDBLite consensus disorder prediction 84 103 - -
Sto5g4218 138 Gene3D - 19 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4218 Sto-Chr5 50853435 50854462 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4218 14 73 Type I MADS-box Gene Family AT2G34440 35.000 1.53e-10 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4218 SRF-TF 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4218 - - egt:105948920 64.6994