Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4217 ATGGAGAACTCGAGTGAGAAGAAGAACGAGAAGCAGGGGATGATTCAAGACGTCGATGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTCTGAAATTTTCCAAGAAGCTATCGAGCTGTCTATTCTATGTGGAGCAGAGTTAGCCATTTTCCTCGCTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGCTAATGCCATAATTAAACGATATACTTCTACAAACGTCGATACCATCATCAAAAAAGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAAGATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAATTGGTGACTTGCTTATATTTGTCCAAGCATAA 390 0.4205 MENSSEKKNEKQGMIQDVDARNAAFLKLKSEIFQEAIELSILCGAELAIFLASPSGEIHCFANPSANAIIKRYTSTNVDTIIKKEGDSPSCSSMSHSQTLTDCDKDKQRDLDAQVEAEKIGDLLIFVQA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4217 129 Gene3D - 18 98 IPR036879 GO:0003677|GO:0046983
Sto5g4217 129 SUPERFAMILY SRF-like 12 81 IPR036879 GO:0003677|GO:0046983
Sto5g4217 129 PANTHER MADS BOX PROTEIN 11 119 - -
Sto5g4217 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 61 IPR002100 GO:0003677|GO:0046983
Sto5g4217 129 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 11 119 - -
Sto5g4217 129 SMART madsneu2 4 64 IPR002100 GO:0003677|GO:0046983
Sto5g4217 129 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Sto5g4217 129 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Sto5g4217 129 ProSiteProfiles MADS-box domain profile. 15 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4217 Sto-Chr5 50851331 50852591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4217 11 122 Type I MADS-box Gene Family AT2G34440 28.814 1.85e-11 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4217 SRF-TF 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4217 - - mus:103978801 66.2402