Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4216 ATGGAGAACTCGtgtgagaagaagaagcaggGGATGATTCAAGACGACCTCGAAGCTAGAAACGCCGCGTTCTTAAAGCTGAAGTCTGAAATTTTCGAAGAAGCTATCGAGCTTTCTATTCTGTGTGGAGCAGAGTTAGCCATTTTCCTCACTTCCCCTTCCGGTGAAATTCATTGCTTCGCTAACCCTTCTGCTGATGCCATAATTAAACGATATACTTCTACAAACACCGATACCATCATCAAAAAAGAAGGTGACTCTCCTTCTTGTTCAAGCATGTCTCATTCGCAGACTCTGACTGATTGTGATAAGAATAAGCAACGTGATTTGGATGCTCAAGTGGAAGCAGAGAAAAGCTTGACATTAGCGCATTTAGCGGTAGCAGGAGCTCCGTTGAATGTGAGATCAATTTCACTGAGCTTTGCATCCTCACACGGTGCAGTTTCGAACTGTAAATCCTTCAACAGGGTCTTCGTTTTGATACCTTCCAAGGCTTCCAACACTAATTCCATGTCCTGGTCCACAAGTAACATTGAAGACATTTACGTGTTTGCTTCCATCGCCCAACGAGATGCAATCATCACCGGTGCCTATGTTGGAGTTGGTGACAGTGATCTCATTTGA 624 0.4263 MENSCEKKKQGMIQDDLEARNAAFLKLKSEIFEEAIELSILCGAELAIFLTSPSGEIHCFANPSADAIIKRYTSTNTDTIIKKEGDSPSCSSMSHSQTLTDCDKNKQRDLDAQVEAEKSLTLAHLAVAGAPLNVRSISLSFASSHGAVSNCKSFNRVFVLIPSKASNTNSMSWSTSNIEDIYVFASIAQRDAIITGAYVGVGDSDLI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4216 207 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Sto5g4216 207 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Sto5g4216 207 ProSiteProfiles MADS-box domain profile. 15 64 IPR002100 GO:0003677|GO:0046983
Sto5g4216 207 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 12 119 - -
Sto5g4216 207 SMART madsneu2 5 63 IPR002100 GO:0003677|GO:0046983
Sto5g4216 207 MobiDBLite consensus disorder prediction 83 102 - -
Sto5g4216 207 Gene3D - 17 85 IPR036879 GO:0003677|GO:0046983
Sto5g4216 207 SUPERFAMILY SRF-like 16 80 IPR036879 GO:0003677|GO:0046983
Sto5g4216 207 PANTHER MADS BOX PROTEIN 12 119 - -
Sto5g4216 207 MobiDBLite consensus disorder prediction 83 100 - -
Sto5g4216 207 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4216 Sto-Chr5 50847168 50849774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4216 7 108 Type I MADS-box Gene Family AT2G24840 28.704 2.22e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4216 SRF-TF 2.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4216 - - aof:109834815 63.929