Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4197 aTGAACTTGAGTGAACACTTGCTGAATGAGTACTTCCCTCAAGGAATCAAAAGCGTGGATGGGTATGAGAAATTGGAGAAAGTTGGGAAGGGAGTAAAGTATACAAGGCTAGGAATAAAGAAACGGCTGAAAGAAGCAGtgagatcatcatcatcaggtcGCATCTATATTGTATATGAATACATGCACCATGATTTGTCAGGTCTTCTTAATCAACCTGCATGGTTTCATTCTTTGACACCTTCTCACATTAAGCTTTTGACGGGGCTTCAATATTGTCATCAGAACAAAATACTTCATCGTGACATCAAAGCCGGGAATGTTCTTATGAACAAAGAAGGAATCCTGAAGCTTGCAGATTTTGGACTGTCCAGGTCAATTAGTGGTATCCCCAACAATCAAAAGCTTACAAATAAAGTTATTACATATTGGTACAGGCCTCCAGAGTTGTTCCTAGGAGCAACCCAATATGGGACAGCTGTTGATATTTGGTCTGCTGGGTGCGTTTTTGCTGAGCTTCATACTGGCCAAAGTATTTTCAGTGCAAAAACTGAGCAAGATACTCTAAATCGCATTTTTAAGCTGTGTGGAACACCACATGAGACCAACTGGCATACGGCACCTAATCTGCCTTTCTATACTGAACTGATGCCACCAACACCAATGCCAAGCACTCTTCGGGAAGTTTTCAAATATTTACAAAAAGATGCTTTGGACTTGTTGGAGAGGATGTTAACACTTGATCCTGATCAGAGAATTAGTGTTGAGGATGCACTTAAAGCCGACTATTTCCGGACTGATCCATTACCTAGCGATCCCAATAGTTTACCCAAGGTTGAGTCATCACATTACTACAAGATAGAGAAACAGCAGAAACGTCTAAGAAACGCTTACCAGCAAAATAGGCCACCAGAAAATCATCTTCCAGAGAGACCTAGCAGTCAGCCACATGCTCCTCCTCCccatcctcctcctcttcctctccttcttcctcttcctcaggGTAGAGTTCCAATTTATCCGCCACGGTTTGGACACTTTCTAGTGTTTAGACAAATGCCTATTTTTGGTTATTATGGAGCTCCATATTATGCTCCATCGTATGGAGGTATGCCTAGCTCTAGTTATCATGGTGTGGCTGGAATTGGCAGTGCTTATGGAGGTGAAATTGGACCATATCCTGTGATTAGAACTATTGCTAGATTTGGTAATTTTGGTGGAGGAAGTGGCAGGGGAAATGGAGGTGCAGGCCCACATTATACTCCAATGTCTGGACCATTTCATGTGACTAGTGGATATACGAATATTGTTGGTTCTGATAGTGGCAGAGGATATGGAGTTGAAGCTCCATATTATGCTCTATGGTATGGGTCTAGAGACGTGTCTAGGTATGGTTCTCATGGTGGAGGCAGAGGTGGTAGATTGTAG 1428 0.4041 MNLSEHLLNEYFPQGIKSVDGYEKLEKVGKGVKYTRLGIKKRLKEAVRSSSSGRIYIVYEYMHHDLSGLLNQPAWFHSLTPSHIKLLTGLQYCHQNKILHRDIKAGNVLMNKEGILKLADFGLSRSISGIPNNQKLTNKVITYWYRPPELFLGATQYGTAVDIWSAGCVFAELHTGQSIFSAKTEQDTLNRIFKLCGTPHETNWHTAPNLPFYTELMPPTPMPSTLREVFKYLQKDALDLLERMLTLDPDQRISVEDALKADYFRTDPLPSDPNSLPKVESSHYYKIEKQQKRLRNAYQQNRPPENHLPERPSSQPHAPPPHPPPLPLLLPLPQGRVPIYPPRFGHFLVFRQMPIFGYYGAPYYAPSYGGMPSSSYHGVAGIGSAYGGEIGPYPVIRTIARFGNFGGGSGRGNGGAGPHYTPMSGPFHVTSGYTNIVGSDSGRGYGVEAPYYALWYGSRDVSRYGSHGGGRGGRL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4197 475 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 48 296 - -
Sto5g4197 475 Gene3D Transferase(Phosphotransferase) domain 1 79 303 - -
Sto5g4197 475 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g4197 475 MobiDBLite consensus disorder prediction 301 329 - -
Sto5g4197 475 Pfam Protein kinase domain 52 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g4197 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 98 110 IPR008271 GO:0004672|GO:0006468
Sto5g4197 475 MobiDBLite consensus disorder prediction 309 329 - -
Sto5g4197 475 SMART serkin_6 22 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g4197 475 SUPERFAMILY Protein kinase-like (PK-like) 16 271 IPR011009 -
Sto5g4197 475 PANTHER CELL DIVISION PROTEIN KINASE 48 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4197 Sto-Chr5 50680720 50683584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4197 52 296 Core Cell Cycle Gene Families AT5G64960 52.000 1.70e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto5g4197 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4197 K08819 - psom:113331963 294.664