Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4188 ATGGCCGTCACCTTCTCAGATCTCCACACAGAATCGGGCCTCAAGTCCCTCGATGCGTTTCTCTCCGGCAAAACCTATATTTCTGGGAATCAATTGACCAAGGACGACATTAAAGTTTACGCCTTTGTTTCCAAGAACCCGGGTAATGCTTTCCCCAATGCCAGCAAGTGGTACGAGGCTGTCTCTTCCCGTCTCGCTCAAAGCTTCCCTGGAAAAGCTCAGGGTGTAAGATTCGGTGGCCAAGCTGCTCCAGCTGAAGCTGCTCCTGCCAAGGCGgatgctgatgatgatgatgatctcgACCTCTTTGGTGATGAGACAGAGGAGGACAAGAAGGCAGCAGAGGCAAGGGAGACTGCTAAAAAGGATTCCtccaagaagaaagagaGTGGCAAGTCTTCTGTTCTGCTTGATGTCAAGCCTTGGGATGATGAGACAGACATGAAAAAGTTGGAAGAGGCTGTTCGCAGCATCGAAATGCCTGGGCTTTTGTGGGGAGCATCCAAACTGGTTCCTGTTGGTTACGGTATCAAGAAGCTGCAGATCATGATGACTATTGTCGATGACCTCGTATCCGTGGACTCCCTCATTGAAGAACATCTTACAGTTGAGCCATGCAACGAGCACGTCCAAAGCTGCGACATCGTTGCATTCAACAAAATTTAA 666 0.467 MAVTFSDLHTESGLKSLDAFLSGKTYISGNQLTKDDIKVYAFVSKNPGNAFPNASKWYEAVSSRLAQSFPGKAQGVRFGGQAAPAEAAPAKADADDDDDLDLFGDETEEDKKAAEARETAKKDSSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEHLTVEPCNEHVQSCDIVAFNKI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4188 221 MobiDBLite consensus disorder prediction 106 133 - -
Sto5g4188 221 PANTHER ELONGATION FACTOR 1-BETA 2 1 221 - -
Sto5g4188 221 SMART EF1_GNE_2 132 221 IPR014038 GO:0003746|GO:0006414
Sto5g4188 221 Gene3D - 3 74 - -
Sto5g4188 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 210 221 IPR001326 GO:0003746|GO:0005853|GO:0006414
Sto5g4188 221 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 221 - -
Sto5g4188 221 SUPERFAMILY GST C-terminal domain-like 10 64 IPR036282 -
Sto5g4188 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 96 104 IPR001326 GO:0003746|GO:0005853|GO:0006414
Sto5g4188 221 SUPERFAMILY eEF-1beta-like 129 221 IPR036219 -
Sto5g4188 221 CDD EF1B 135 221 IPR014038 GO:0003746|GO:0006414
Sto5g4188 221 Pfam EF-1 guanine nucleotide exchange domain 134 221 IPR014038 GO:0003746|GO:0006414
Sto5g4188 221 Gene3D - 125 221 IPR014717 -
Sto5g4188 221 MobiDBLite consensus disorder prediction 76 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4188 Sto-Chr5 50588232 50590201 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4188 1 221 Eukaryotic Initiation Factors Gene Family AT5G12110 75.000 2.00e-109 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4188 K03232 - egr:104421434 321.242