Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4187 ATGTCAAGTGGAGCAACGCATTGGTGTTATGAGTGCGGGCGACCGATTGTGCTTGAAGGGAGAGAAATTATTTGCCCTTACTGCCATGAAGGGTTTGTGCAAGAACTTAATGAGATGCAAGTCCTTCCAACACATGATGCGTTGGAAGAGTTTCATCAAATGCCCGACATTTTTGATGCTTTCAATGCTTTTATGCGACGGAGAAGTTCTGAACCAAGATTTGGGCTTATAGATGCTGTTGACAATTTCATGAGGCAGAGAATGGCTGGACGATACCCAAACTTTGATGTTAGAACAAGCCAAGGAGGTGGTCCCAGGCGTGTCGATTTTGGTGACTACTTTATGGGCCCTGGACTGGAAGAACTTATTGAACAGCTCACCATGAATGATCATCGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACAGACACATCTTCGTTCTGATTCGCACTGTCCTGTCTGTAAAGAAAAATTTGAACTAGGCTCTGAGGCTAGGCAGATGCCCTGTAACCATATTTATCACTCTGACTGTATCGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCACAAGGACACAGTTGTTCTCGTGGTAGTAGTAGAGGTGGAAGGAATGCCAGTAGCAATAGTGACAATGCTCGCTCTCGGAGCCGGGAGAACAGTCAGCAGAACCAAGGAAGAAGAAATCCACTTTCGGCATTTTGGCCATTCCGTTCGTCTAGTTCGAACACCAATCATTATGGCGAGACTGAGGGAAGCAGCTCTTCAACCACACATGACCAGAATACCAGGACAGGTTATAGAGGATGGCCATTTGATTACTGA 876 0.4612 MSSGATHWCYECGRPIVLEGREIICPYCHEGFVQELNEMQVLPTHDALEEFHQMPDIFDAFNAFMRRRSSEPRFGLIDAVDNFMRQRMAGRYPNFDVRTSQGGGPRRVDFGDYFMGPGLEELIEQLTMNDHRGPPPASHSSIDAMPTIKITQTHLRSDSHCPVCKEKFELGSEARQMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHSCSRGSSRGGRNASSNSDNARSRSRENSQQNQGRRNPLSAFWPFRSSSSNTNHYGETEGSSSSTTHDQNTRTGYRGWPFDY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4187 291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 208 IPR013083 -
Sto5g4187 291 CDD RING-H2_RNF126_like 161 202 - -
Sto5g4187 291 MobiDBLite consensus disorder prediction 210 282 - -
Sto5g4187 291 Pfam Ring finger domain 160 202 IPR001841 -
Sto5g4187 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 274 - -
Sto5g4187 291 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 99 - -
Sto5g4187 291 SUPERFAMILY RING/U-box 141 208 - -
Sto5g4187 291 ProSiteProfiles Zinc finger RING-type profile. 161 202 IPR001841 -
Sto5g4187 291 MobiDBLite consensus disorder prediction 209 291 - -
Sto5g4187 291 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Sto5g4187 291 PANTHER OS03G0351800 PROTEIN 101 274 - -
Sto5g4187 291 PANTHER OS03G0351800 PROTEIN 1 99 - -
Sto5g4187 291 SMART ring_2 161 201 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4187 Sto-Chr5 50574157 50575104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4187 105 215 C3H Transcription Factor Family AT5G01980 44.248 4.44e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4187 K11982 - gmx:100813674 419.083