Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4158 ATGGCGTTGACACTACTAGATGAGAGGTGGAGGAGTAGTGGTAGTAGTAGTACTACCAATACTGatcatgaagaagaagaagatattaATGCAGATTCAGAATACTTGTACTGTGATGAATTTCAGAATCATCAGAAtatcaaaaataataatgtagtgAAGAAGTCGCCATCAGCACCACCAGCACCATTCCTCACAAAGACATATGAGCTTGTGGATGATCCTCTCACTGATCACATTGTGTCATGGGGTTCTCACCATTCCACTTTCATTGTGTGGAGGCCACCTGAGTTTGCCAGAGATCTCCTTCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTTGTTAGGCAGCTCAATAcctatGGATTCAAGAAGGTAGTTGCAGATAGGTGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCCAAGCATCTTCTTTGTGAAATCCACAGAAGAAAATcccctcatcatcatcatcatcatcatcaatttcAAAATCTGTATTATAATTGGAATACAGAAAGCCCTCCTCCATTTTTaataccatcatcatcatctcctaAACCTACAAGTACTTATAAATCTTCAGTAGGAGGAAGAAGCACTAATGATGATGAGAATAGGAGTAGTAGTGATATTGTAAGAGAACTTTCAGAAGAAAATCAAAGACTGAGGAGAAAGAACTTGATGCTCTTATCTGAACTCACCCACATGAAGACTCTCTATAATGACATCATTTACTTCATCCAAAACCATATCAAACcaagtaattataaaaataatattaataataatattcccAAGCTAGTAGATTTGGATTCTTCAGTAATATTATCATCATCTTCACCTCTTCAATCTCATGAACATGATGATCACACTACTCAATGTTCTGCTGTGAAGCTATTTGGGGTTCCTCTTAGTGGGAAAAAGAGGTTGCACACAGAAAacatgaattaa 960 0.3292 MALTLLDERWRSSGSSSTTNTDHEEEEDINADSEYLYCDEFQNHQNIKNNNVVKKSPSAPPAPFLTKTYELVDDPLTDHIVSWGSHHSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKSPHHHHHHHQFQNLYYNWNTESPPPFLIPSSSSPKPTSTYKSSVGGRSTNDDENRSSSDIVRELSEENQRLRRKNLMLLSELTHMKTLYNDIIYFIQNHIKPSNYKNNINNNIPKLVDLDSSVILSSSSPLQSHEHDDHTTQCSAVKLFGVPLSGKKRLHTENMN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4158 319 Gene3D - 57 155 IPR036388 -
Sto5g4158 319 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 57 313 - -
Sto5g4158 319 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 57 313 IPR027725 -
Sto5g4158 319 MobiDBLite consensus disorder prediction 181 214 - -
Sto5g4158 319 Pfam HSF-type DNA-binding 64 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 ProSitePatterns HSF-type DNA-binding domain signature. 103 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 PRINTS Heat shock factor (HSF) domain signature 64 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 PRINTS Heat shock factor (HSF) domain signature 115 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 MobiDBLite consensus disorder prediction 181 205 - -
Sto5g4158 319 SUPERFAMILY "Winged helix" DNA-binding domain 60 153 IPR036390 -
Sto5g4158 319 SMART hsfneu3 60 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto5g4158 319 Coils Coil 208 235 - -
Sto5g4158 319 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4158 Sto-Chr5 50343292 50345255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4158 52 314 HSF AT1G46264 48.845 2.12e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto5g4158 HSF_DNA-bind 1.9e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4158 K09419 - bvg:104890107 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g4158 5 50343292 50345255 Sto5g4158 5 50343292 50345255 ECH