Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4117 ATGGGAAAGAATGAGTTTCTGACGCCAAAGGCTATTGCTAATCGAATCAAAGCGAAAGGGCTGCAGAAGCTTCGATGGTATTGCCAAATGTGCCAGAAGCAATGCCGAGATGAGAACGGGTTCAAGTGTCATTGCATGAGTGAAAGCCACCAGCGTCAAATGGAAATATTTGGACAAAACCCTCATCGGATAATTGAGGGCTACTCTGAGGAGTTTGAGAGTACTTTTCTTGAGCATATGAAGCGCAGCCACCGATTCAGTCGTGTAGCAGCTACAGTAGTTTACAATGAGTATATTAATGATAGACACCATGTTCATATGAATTCCACCCAGTGGGCTACGCTAACCGAGTTTGTCAAGCATTTGGGTCGGACTGGCAAATGTAAGGTTGAAGAAACACCAAAGGGTTGGTTTATCACATACATTGACAGAGATTCAGAGACTCTTTTCAAAGAGAggatgaaaaataagagaataaaGGCAGACATGGCAGAAGAAGAAAAGCAAGAGAAAGAAATAAGGAAACAAATAGAAAAAGCCGAGCAGTTGATGCAACCGTCTATCTCTGGGTCTGACCAATCCTTACAGGCTGAGCTTCCTAGGGAATTGAAGGTGGAAGATGGAATTAAGATTGGATTTACTCTTGGTTCATCAGCAAAACCTATAACCAAGGAAAAACATGAGGGACCAAAGGTAGTGTTTGATGAGGCTGAGGATTCGAGAAATGAAGAAAGGAACCCTAGAGGCTCCTTAAAGAGGAAAGAGAGTGGTGGTGGGAAATCAGCATTGGATGAATTGATGaaggaggaggaaaagaaaagggaaaaaattaATAGGAAGGATCATTGGCTGCATGAGGGAATTGTTGTTAAGATCATGAGCAAAGCTCTGGCTGATAAAGGGTATTACAAACAAAAGGGTGTTGTGTTAAAGGTAATAGACAAATATGTTGGGGAAATAGAAATGCTTGAAAGCAAGCATGTGCTTAGAGTTGATCAAGAAGAGCTTGAAACTGTGATTCCCCAAATCGGGGGCCTTGTAAAGATAGTAAATGGTGCGTATCGCGGATCGATAGCAAGATTATTAGGGGTTGATACTGATCACTTTTGTGTTAAGTTGCAGATAGAGAAAGGTCCTTACGATGGTAGAGTACTTAATGCTGTGGAATACGAGGATATTTGTAAAATTGCCAGTTAA 1197 0.401 MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMEIFGQNPHRIIEGYSEEFESTFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKHLGRTGKCKVEETPKGWFITYIDRDSETLFKERMKNKRIKADMAEEEKQEKEIRKQIEKAEQLMQPSISGSDQSLQAELPRELKVEDGIKIGFTLGSSAKPITKEKHEGPKVVFDEAEDSRNEERNPRGSLKRKESGGGKSALDELMKEEEKKREKINRKDHWLHEGIVVKIMSKALADKGYYKQKGVVLKVIDKYVGEIEMLESKHVLRVDQEELETVIPQIGGLVKIVNGAYRGSIARLLGVDTDHFCVKLQIEKGPYDGRVLNAVEYEDICKIAS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4117 398 MobiDBLite consensus disorder prediction 221 274 - -
Sto5g4117 398 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Sto5g4117 398 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 397 IPR037321 -
Sto5g4117 398 CDD KOW_KIN17 343 396 IPR041995 -
Sto5g4117 398 Gene3D - 341 397 IPR014722 -
Sto5g4117 398 SMART Kin17_mid_2 52 178 IPR019447 -
Sto5g4117 398 Coils Coil 260 280 - -
Sto5g4117 398 PANTHER BNAA05G13760D PROTEIN 1 397 - -
Sto5g4117 398 Coils Coil 154 183 - -
Sto5g4117 398 Gene3D - 287 340 - -
Sto5g4117 398 Pfam KN17 SH3-like C-terminal domain 279 332 IPR041330 -
Sto5g4117 398 Gene3D - 60 160 IPR038254 -
Sto5g4117 398 SUPERFAMILY beta-beta-alpha zinc fingers 26 66 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4117 Sto-Chr5 49964592 49965788 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4117 1 397 C2H2 Transcription Factor Family AT1G55460 70.631 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4117 K13102 - gmx:100784271 684.871