LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g4077	TTGTGCATTTGGCTCTATGCGGAGTTCACCTTCTTGAGTCCAAATTCAATAAAAAGGAATGGCCTAGTTCTTATTGTCCTTAGATGGGAGCCACCTGCGCTGGGATGGTTCAGGCTTAATGTGGATGGGTCTTATCTTGGACCTAATAGCCATATTGCAGCTGTCGATGTTATTCGTAATGATAGTGGTCATTGGGTTAATGGTATTGCACAATTTTGTGGTCCTTCCTACCTCAATTCAGCCAATGCATCGTTTTGGATTTTGCGGGACTCAGATCTTCGGGTATTGGAGTTGGAGAAGAGGCGCGCGCATGTGCTGGATGCCGAATTTCGTTTGGAGTCTATGTTTCGTGAAGCATTTGGGGGAGATAATACGCTGCAATTGTGGCTTCTGATCCGGAGCAGGGGACGGTTTTTGAGACTGTTTTTGTGTCGGCAGAGAATGCAGCAAGATCAAAGAAAGAAGAGTTCAACAGAGATGGAATTTTTCTCTGAATATGGCGATGCCAACCGGTACAAAATTCAAGAAGTCATTGGGAAGGGAAGTTATGGTGTTGTTTGTTCAGCCATAGACAGTCATACCGGAGAAAAAGTGGCAATAAAAAAGATACATGACATCTTTGAGCACATATCTGATGCTGCACGCATTCTCCGTGAGATAAAGCTGCTCAGACTTCTAAGACATCCTGATATTGTTGAAATCAAACACATTATGCTTCCTTCTTCAAGGAAGGACTTTAAAGATATTTATGTGGTCTTTGAATGCATGGAGTCCGACCTTCATCAAGTCATTAAAGCTAATGATGACTTAACAAAAGAGCACCATCAGTTTTTTCTTTACCAGTTACTGCGAGCATTGAAGTATATTCACACAGCAAATGTCTATCATCGAGATTTGAAACCGAAGAATATACTGGCCAATGCAAACTGTAAGCTTAAAATCTGCGATTTTGGGTTAGCTAGAGTTGCCTTTAGTGACACACCAGCAACTATTTTTTGGacgGATTATGTTGCTACCAGGTGGTATAGAGCTCCGGAACTATGTGGGTCATTTTACTCAAAGCTAATTCTGATCTGTCTGGTGCTTGCTATCTCTGCTGTTTTTCATATCTTGAAAAAGTTCTTTGTATGGGTGGAATATGTTTCTCTGTTTAGTTTTAACTATAGAATGTATACACCTGCCATTGATATATGGAGTATAGGCTGCATCTTTGCTGAAGTATTAACTGGAAAACCACTTTTTCCTGGAAAAAATGTGGTACATCAGTTGGATCTCATGACCGATCTTCTTGGGACTCCCTCACTTGATACTATATCCAGGGTACGTAATGACAAGGCAAGGAGATACCTAACTAGCATGAGGAAAAAACAGCCTGTTCCGTTTGCACAAAAGTTTCCAAATGCGGATCCTTTAGGATTAAGTCTACTAGAAAGGTTGCTCGCTTTTGATCCTAAAGATAGGCCTAATGCTGAAGAGGCATTGGCCCATCCTTACTTTAAGGGACTAGCAAAATTTGATAGGGAACCATCCTGCCAGCCTATCTCAAAGATGGAGTTTGAATTTGAAAGGCGAAGGGTGACCAAGGAAGAAATTCGAGAGCTGATCTTCCGTGAGATTCTAGAATATCATCCTCAATTATTGAAAGACTACATGAATGGAATAGAGAAAACTAATTTTCTTTATCCAAGCGCTGTTGAGCACTTTAGGAAGCAGTTTGCAAATCTTGAGGAAAATGGTGGTAAAAACGGGCCAGTTATGCCACCTGAAAGAAAACATGTTTCTCTTCCAAGGTCAACGGTTGTACATTCAAATATAGCACTCCAAAAAGAGCAATCAAATATTACTTCTTGCAAAACTCGGCAAACCACTGAGGAATGTGGTAACTCCTTAGATACAGAAATTTCTGTGCCCAGGACCATGCAGGGACCGCAAAGAATGCCACTGGCAAAACCCGATAAAGTTGTCGGTCCAGTTGCTCCGTACGAGTATGAGAGTGTTACGAAGGATCCTTACGATCCAAGGTCGTATATCAGAGGTTCAGTGCCTCCTTCTCAAGCTGTTCCCCCTGCATATTATTACCAAAGATCGAGCTCAGGATATCAAGAGAGCTCAGCATCAGCAGAAGCAGCCAAGGTTGTGACTTTCCAAGCTAAGCATGCCCAGCAATGTGGAGTTAATGCCAAAGTAGCACCAGATATAGCTATTAGTATTGATACAAATCCCTTTTTTATGACTCGGGCAGGAGTGAACAAGATCGATCAGGACGATCAAATAGCTATCGACACAAATTTACTGCAGCCGAAGGCTCACTATGGCGCGATCAGTTCCGCGGCTGCTGGGACCACTTCTCATAGAAAGGTTGGTTCGGTTCAGTACGGTATGGCACCGATGTTCTAA	2397	0.4222	LCIWLYAEFTFLSPNSIKRNGLVLIVLRWEPPALGWFRLNVDGSYLGPNSHIAAVDVIRNDSGHWVNGIAQFCGPSYLNSANASFWILRDSDLRVLELEKRRAHVLDAEFRLESMFREAFGGDNTLQLWLLIRSRGRFLRLFLCRQRMQQDQRKKSSTEMEFFSEYGDANRYKIQEVIGKGSYGVVCSAIDSHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPSSRKDFKDIYVVFECMESDLHQVIKANDDLTKEHHQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPATIFWTDYVATRWYRAPELCGSFYSKLILICLVLAISAVFHILKKFFVWVEYVSLFSFNYRMYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPVPFAQKFPNADPLGLSLLERLLAFDPKDRPNAEEALAHPYFKGLAKFDREPSCQPISKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYMNGIEKTNFLYPSAVEHFRKQFANLEENGGKNGPVMPPERKHVSLPRSTVVHSNIALQKEQSNITSCKTRQTTEECGNSLDTEISVPRTMQGPQRMPLAKPDKVVGPVAPYEYESVTKDPYDPRSYIRGSVPPSQAVPPAYYYQRSSSGYQESSASAEAAKVVTFQAKHAQQCGVNAKVAPDIAISIDTNPFFMTRAGVNKIDQDDQIAIDTNLLQPKAHYGAISSAAAGTTSHRKVGSVQYGMAPMF	798

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g4077	798	Gene3D	Phosphorylase Kinase; domain 1	170	255	-	-
	Sto5g4077	798	ProSitePatterns	MAP kinase signature.	207	310	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Sto5g4077	798	Gene3D	Phosphorylase Kinase; domain 1	523	545	-	-
	Sto5g4077	798	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	156	357	-	-
	Sto5g4077	798	CDD	STKc_TDY_MAPK	171	544	-	-
	Sto5g4077	798	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	156	357	-	-
	Sto5g4077	798	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	387	670	-	-
	Sto5g4077	798	SMART	serkin_6	172	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g4077	798	ProSiteProfiles	Protein kinase domain profile.	172	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g4077	798	Gene3D	Transferase(Phosphotransferase) domain 1	256	352	-	-
	Sto5g4077	798	SUPERFAMILY	Protein kinase-like (PK-like)	168	503	IPR011009	-
	Sto5g4077	798	Gene3D	Transferase(Phosphotransferase) domain 1	387	522	-	-
	Sto5g4077	798	Pfam	Protein kinase domain	172	348	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g4077	798	Pfam	Protein kinase domain	387	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sto5g4077	798	ProSitePatterns	Protein kinases ATP-binding region signature.	178	202	IPR017441	GO:0005524
	Sto5g4077	798	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	387	670	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g4077	Sto-Chr5	49481182	49493099	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g4077	148	628	MAP Kinase Gene Family	AT2G42880	78.378	0.0	757

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Sto5g4077		Pkinase	1e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g4077	-		-	gmx:100811788	1008.44