LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g4076	ATGCTTCCTGATGATGAAGAACTATTAGCTGGTATAATGGATGACTTTGACCTTAGTAGATTGCCCAGCCAACTAGAGGATCTTGATGAAAATGATCTGTTCGGTAGTGGAGGGGGGTTTGAAATGGATTTTGAGCCCCAGGAGGGTCTTAATATTGGCATGTCAAGGATGAGCATTTCTGATGGAATTTCTTCAAATGGTATTGGCCATTATGCACTTCACAATGGTGTGGGACCAGTGGCGGGGGAGCACCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAGGACTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATTAGAACTTTGTATACTGCATGTAAGCATAGGGGTTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGCACTTTACAAAACAAGCCCTTGAGACGaagaaaacttgacattcatttttcaatACCTAAGGACAACCCCTCAGAAAAGGATATTAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCATCAGTTTCAAATGATGATCTTCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATTAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGATGCTGAGGCAGCTCTTAAAGCGTTAAATAGGAGTGACATTGCTGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGAGCACGGAGGAATTTGATGCAACAACTGAGTCAAGAGCTAGAGCTAGATGAAGCACGGACTTTTAGACATCAAGTAGGTTCACCGTTGGCCCATTCTCCTCCTGGTAACTGGACACAATTTGGCAGTCCGGTTGAACATAATTATTTAAGTCCTTTTAGCAAGTCTCCTTCTTTGGGACATGCTAGCCCTGTGAATAGCAACCATTTGCCTGGGTTGGCTGCAATTCTTTCTCCTCATGCGTCGAACTCAACAAAGATTGCTCCAATAGGCAAGGACCCCGGAAGGGCTAATAATTCAAATCAGTTATTTACAAACTCTGGATCAACACAAGGAACAGCTTTTCAACATTCTCTGTCATATCCTGagcaaaaaataaatgtaagTTCTAGATCTATTTCTACTTTTGGTGAATCCAGCTCAAGTTCATCAAGCATTGGTACGCTGTCTGGTCCTCAATTTCTTTGGGGCAGTCCAACTACTACCTACATAGAGCAGGCGAACACTTCTGCGTGGTCTTCATCATCAGCTGGGCTTTCATTTACATCTAGTGGCGAGAAGCAGGTTTTTCCATATACCAGTCGACACAGTTCTTATCTTGGTTCTCACTCCCATCATCATGTGGGATCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTCCCAGAGTCACCAGAATCTTCTTTCATGAGTCCAGTTGCATTTGGGAGTTTAAATCAtggtaatgggaattttatGAACTTGGGTGCTCGTGCAGCGGTAGGGGTTGGTGGTGTCACAGGAAATACAACTGAAATTAATTCACCTAATTTTAGAATGATATCACTTCCTAGGCCTGGTTCATTGTTTCTTGGAAATGGTTCTTATTCTGGACCTGGTGCAAATATCGAGGGGTTTGCTGAACGTGGTCGGAGTCGGCGACCTGAAAATATTGGACCTCAAATTGATATCAAGAAGCAGTATCAGCTTGATCTGGACAAAATTATCAGTGGGGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTGCTGTCTGCTATTGATGAGAATCACTGTGGTACATATGATTTTCTGTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATTAACACGGTCTCTCCTTCACACATCATTCCCTTCTATAAGGAATTTAATGGGAAGAAATGGGAGAAGTTTAATAGTGAAAAAGTTGCATCATTGGCATATGCCCGAATCCAGGGAAAGGCTGCTCTTGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCAATTGTCTTTCATTCGGAGGGCCAAGACACTGTTGATCAGGAACCTTTCTTATCCAGCAATTTGAATGTATGCATCCGTCAACCAGATGGCTCATACTCCAGTGATTTATTGGAGAGCCCGAAGGGTGATTTGGATGACAAGCTATAG	2241	0.4119	MLPDDEELLAGIMDDFDLSRLPSQLEDLDENDLFGSGGGFEMDFEPQEGLNIGMSRMSISDGISSNGIGHYALHNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRTLQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRDAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELELDEARTFRHQVGSPLAHSPPGNWTQFGSPVEHNYLSPFSKSPSLGHASPVNSNHLPGLAAILSPHASNSTKIAPIGKDPGRANNSNQLFTNSGSTQGTAFQHSLSYPEQKINVSSRSISTFGESSSSSSSIGTLSGPQFLWGSPTTTYIEQANTSAWSSSSAGLSFTSSGEKQVFPYTSRHSSYLGSHSHHHVGSAPSGLPLDRHFSYFPESPESSFMSPVAFGSLNHGNGNFMNLGARAAVGVGGVTGNTTEINSPNFRMISLPRPGSLFLGNGSYSGPGANIEGFAERGRSRRPENIGPQIDIKKQYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLSAIDENHCGTYDFLYLPIDFKNKCNVGYAFINTVSPSHIIPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPIVFHSEGQDTVDQEPFLSSNLNVCIRQPDGSYSSDLLESPKGDLDDKL	746

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g4076	746	CDD	RRM2_MEI2_like	176	246	-	-
	Sto5g4076	746	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	177	250	IPR000504	GO:0003723
	Sto5g4076	746	Pfam	RNA recognition motif 2	589	685	IPR007201	-
	Sto5g4076	746	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	92	165	IPR000504	GO:0003723
	Sto5g4076	746	PANTHER	PROTEIN MEI2-LIKE 2	1	743	-	-
	Sto5g4076	746	SUPERFAMILY	RNA-binding domain, RBD	591	676	IPR035979	GO:0003676
	Sto5g4076	746	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	94	158	IPR000504	GO:0003723
	Sto5g4076	746	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	179	244	IPR000504	GO:0003723
	Sto5g4076	746	SMART	rrm1_1	178	246	IPR000504	GO:0003723
	Sto5g4076	746	SMART	rrm1_1	93	161	IPR000504	GO:0003723
	Sto5g4076	746	SMART	rrm1_1	591	667	IPR000504	GO:0003723
	Sto5g4076	746	MobiDBLite	consensus disorder prediction	335	368	-	-
	Sto5g4076	746	CDD	RRM1_MEI2_like	91	167	IPR034453	-
	Sto5g4076	746	PANTHER	RNA RECOGNITION MOTIF-CONTAINING	1	743	-	-
	Sto5g4076	746	SUPERFAMILY	RNA-binding domain, RBD	89	252	IPR035979	GO:0003676
	Sto5g4076	746	CDD	RRM3_MEI2_like	592	677	IPR034454	-
	Sto5g4076	746	MobiDBLite	consensus disorder prediction	346	368	-	-
	Sto5g4076	746	Gene3D	-	81	175	IPR012677	-
	Sto5g4076	746	Gene3D	-	176	273	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g4076	Sto-Chr5	49455455	49460987	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g4076	87	402	Eukaryotic Initiation Factors Gene Family	AT3G16380	23.276	3.22e-11	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g4076	-		-	gmx:100812324	1208.74