Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4047 ATGGTGAAAGAAAGCCAGGGGAAAACATTGATTCAGAACAGAAATTCCAGACATATAACTTTTTCAAAGCGTCGCTCTTCAATTTTCAAGAAAGCTTGCGAGCTTTGTGCGTTATGTGCCGTAGAGATGGTTatcatcatcttttctccagGAGGGAAACCTTATGCCTTTGGAAATCCGTCTCCAAATGATGTGATTGACAGGTTTCAAAATTCTATTGATTCCAATGCTCCTTTTGTTACTGTCGCAGGAAAAAGGTACCGACGAGAAACTATGAAAATTATGATTGAGGGCCTTTATGAACAATACGAAAAACTGAATTCTCAATTGAAGGAGGAGAAGGAACGGGGGATGACTTTGAAGCAAAAGATGATGGATTTTCCTGATGTTACAAAGATGAATAAAGATCAATTGATTGAGTTTAAAGCATCATTGGAAAATCTGAAATTGAAAGTATTGATTCGTAAAGAAGAGCTTTCGGTTAAGGAGTCTGTGGATCTAACGTTATCATTAGGGAAACCTTTCGCCTTTGGAAATCCGTCTCCAAATGATGTGATTCATAGGTTTCAAAATTCTATTGATTCCAATGCTTCTTTTGTTACTGTCGCAGGAAAAAGGTACCGACGAGAAactatgaatattatgatgaagGACCTTTATGAACAATACGAAAAACTGAATTCTCAATTGAAGGAGGAGAAGGAACGGGGGATGACTTTGAAGCAAAAGATGATGGATTTTCCCGATGTTACAAAGATGAATAAAGATCAATTGATTGAGTTTAAGGCATCATTGAAAAATCTGAAATTGAAAGTATTGATTCGTAAAGAAAAGCTTTTGGTTAATGAGTCTTTGGATCTAACGTTATCATTAGGTGGAATATATAATTCTTGA 894 0.3468 MVKESQGKTLIQNRNSRHITFSKRRSSIFKKACELCALCAVEMVIIIFSPGGKPYAFGNPSPNDVIDRFQNSIDSNAPFVTVAGKRYRRETMKIMIEGLYEQYEKLNSQLKEEKERGMTLKQKMMDFPDVTKMNKDQLIEFKASLENLKLKVLIRKEELSVKESVDLTLSLGKPFAFGNPSPNDVIHRFQNSIDSNASFVTVAGKRYRRETMNIMMKDLYEQYEKLNSQLKEEKERGMTLKQKMMDFPDVTKMNKDQLIEFKASLKNLKLKVLIRKEKLLVNESLDLTLSLGGIYNS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4047 297 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 SUPERFAMILY SRF-like 10 77 IPR036879 GO:0003677|GO:0046983
Sto5g4047 297 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 171 283 - -
Sto5g4047 297 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 10 163 - -
Sto5g4047 297 Coils Coil 89 123 - -
Sto5g4047 297 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Sto5g4047 297 ProSiteProfiles MADS-box domain profile. 11 61 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto5g4047 297 Coils Coil 209 243 - -
Sto5g4047 297 PANTHER MADS BOX PROTEIN 171 283 - -
Sto5g4047 297 PANTHER MADS BOX PROTEIN 10 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4047 Sto-Chr5 49074281 49079385 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4047 172 272 Type I MADS-box Gene Family AT2G34440 28.037 8.19e-06 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4047 SRF-TF 7.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4047 - - thj:104820707 107.842