Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4045 ATGTTCCAGAATGAAACAAGTAATCTGCTAGTTCCTATAGCCCAGGCTTTAAGGACAATTGAGGAAGTCTTGTACCTTAAGAGGGATAGAAAAAGCCCAAAGCAGGGTCGTCTACACCCCTATCAGCCAGTTATGACTACTCAGATGCTTAACCCTGATTTTTCAGAGATCAACATCAGTGTGGAGAAGGCGAACGGAGGCAAATTCTGCCATTGGCTGGCTTCTAGGAAGAGGAATGATATAATCCAACCTGTCGTTGGGTTTATTAGGCAGAAGATTCGTTCAATTCTAGAGGTCCACCTTCGTGGCCTCAGGTTTCTCTTGGAGTGCATCAAGGTACACCAGATGGAGAAAATCATCATAAATGTTCCTAACAATAGGATAGTAGACCTGATAAATTGTTATGACAGCTCCCATAGAGACCTTGACATCCTTGTTAAGGACATTAGATCCCTTCTTCTATGTACTAGTCAAGTTTATATTTGTCACAAACAGAATGAGTCCCCCAactttttgttttctcttatgGGTGGACAGGAAAGCAAGAGGAAGAAGACATCGAATCAAGGCTCAACTTCCAAACATGTAACTTTTTCAAGGTATCGCTCATCAATTTTCAAGAAAGCTAGTGAGTTGTGTTTGCTATGCGCAGTGGAGATggttatcatcatcttctcacCCGGAGGGAGACCTTATTCATTTGGGAATCCATCTCCAAATGATGTCATTCACAGGTTTCAAAATTTTGCTGATTCAAATGCTCCTGTTGTTACTGCTGCCGGAGAAGGGTCCCAACGAGAAACGAATACGATGATCGATGACCTTTATGAACAATACCAAAAATTGAGTTCTCAATTGAAGGAGGAGAAGAAACGAGGGAAGACTTTGAATGAAAAGATGATGAATTTTCCGGATATTAAAAAGATGAATGAAGATCAATTGCTTGAGTTTAAGGCATTGCTGGAAAATCTCAAATTGAAAGTATTGATTCGTAAAGAACAAGTTTCCGTCAATGCGTCATTGGATCTGACATTGACATTGGGTGGAATATATTCCTAA 1059 0.3909 MFQNETSNLLVPIAQALRTIEEVLYLKRDRKSPKQGRLHPYQPVMTTQMLNPDFSEINISVEKANGGKFCHWLASRKRNDIIQPVVGFIRQKIRSILEVHLRGLRFLLECIKVHQMEKIIINVPNNRIVDLINCYDSSHRDLDILVKDIRSLLLCTSQVYICHKQNESPNFLFSLMGGQESKRKKTSNQGSTSKHVTFSRYRSSIFKKASELCLLCAVEMVIIIFSPGGRPYSFGNPSPNDVIHRFQNFADSNAPVVTAAGEGSQRETNTMIDDLYEQYQKLSSQLKEEKKRGKTLNEKMMNFPDIKKMNEDQLLEFKALLENLKLKVLIRKEQVSVNASLDLTLTLGGIYS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4045 352 SUPERFAMILY SRF-like 187 253 IPR036879 GO:0003677|GO:0046983
Sto5g4045 352 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 187 340 - -
Sto5g4045 352 Pfam Reverse transcriptase-like 91 164 IPR002156 GO:0003676|GO:0004523
Sto5g4045 352 Gene3D - 191 257 IPR036879 GO:0003677|GO:0046983
Sto5g4045 352 ProSiteProfiles MADS-box domain profile. 189 238 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 SMART madsneu2 176 237 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 Coils Coil 272 299 - -
Sto5g4045 352 PRINTS MADS domain signature 180 200 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 PRINTS MADS domain signature 200 215 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 PRINTS MADS domain signature 215 236 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 192 234 IPR002100 GO:0003677|GO:0046983
Sto5g4045 352 PANTHER MADS BOX PROTEIN 187 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4045 Sto-Chr5 49056108 49058170 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4045 189 328 Type I MADS-box Gene Family AT2G34440 32.653 8.39e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4045 RVT_3 0.00011 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4045 - - dzi:111281185 108.227