Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4039 ATGCAAGAAGTGAATGGCAATGGTGAGGGAGCAGGAATAAAGGAAGGATACTTCTTCTGCATGAGAGGGAGGAAATACAGAAACAGCATAAGACCTAACAGAGTGACTATGAGTGGATCTGGCTTCTGGAAAGCCACTGGAATCGACAAACCTATTTATGGTTATGGGATTCTCAAACACCAGAAACACAAATCATTGTCAGACAAAGACATGATGAACATTATTGGTCTCAAGAAATCCTTAGTGTACTATCGTGGAACTGCTGGGAAAGGCTCCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCTCCTCAAACTCAAACTCCTACTCCTACTACTACCAATCTTCAAGAATCTGAAGTGTGGACACTATGCAGAATCTTCAAAAGAATCCCATCTCACAAGAAGCCCACACCATCACCATCCACCATCACACATTCATCTTCTAAAGCAACAACCACCTTGAGATCATCTGACATCAACATTAATggccactcaccaccaccatgcTTCCCCTTCAAGGACTCATCAATCATCAATAATATTCACCAAAATGATCATCAAGAAAGGAAGCAGGTGATTctgaatattaataataatggtGGTGATCAGGTTGAATCACATGAAGAAGAAATTAGAAACAACTTGTTCCTaggtcatcatcatcatcatcaacatgaGTTTCCTCAAGCTCCACCACCATTAGTGTCTTACCcttaccctaaccctaaccctagttTTTGGAACCCTAATTATAAtaatgtgatgatgatgatgatgatggaggatCAGGATATGTTTGCAAATGGTGGAAATTGGGATGAGCTTGGACCTATTGATCACTTACCTATGGATGATCCATTATTCAAGCTTAATTATCATCATGATTGTACAGATTATTAG 906 0.3433 MQEVNGNGEGAGIKEGYFFCMRGRKYRNSIRPNRVTMSGSGFWKATGIDKPIYGYGILKHQKHKSLSDKDMMNIIGLKKSLVYYRGTAGKGSKTDWMMHEFRLPPQTQTPTPTTTNLQESEVWTLCRIFKRIPSHKKPTPSPSTITHSSSKATTTLRSSDININGHSPPPCFPFKDSSIINNIHQNDHQERKQVILNINNNGGDQVESHEEEIRNNLFLGHHHHHQHEFPQAPPPLVSYPYPNPNPSFWNPNYNNVMMMMMMEDQDMFANGGNWDELGPIDHLPMDDPLFKLNYHHDCTDY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4039 301 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 272 - -
Sto5g4039 301 SUPERFAMILY NAC domain 15 130 IPR036093 GO:0003677|GO:0006355
Sto5g4039 301 Pfam No apical meristem (NAM) protein 13 103 IPR003441 GO:0003677|GO:0006355
Sto5g4039 301 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 10 272 - -
Sto5g4039 301 MobiDBLite consensus disorder prediction 137 154 - -
Sto5g4039 301 ProSiteProfiles NAC domain profile. 1 131 IPR003441 GO:0003677|GO:0006355
Sto5g4039 301 MobiDBLite consensus disorder prediction 134 154 - -
Sto5g4039 301 Gene3D NAC domain 2 134 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4039 Sto-Chr5 49017860 49022247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4039 21 215 NAC Transcription Factor Family AT2G43000 44.340 1.37e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto5g4039 NAM 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4039 - - tcc:18612219 164.851