Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4026 ATGCCGCGTTGCATATGGAATAAAGCAAATTCCTCAATTCAATCCAAAATGGAGAATGCAGATGAGAAGATGAGGTTCATTGAAGACCCCAAAGTCAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAAATTTTGAAAGAATATAGCGAGCTTTCTACCGTTTGTGGAGCAGAGTTCGTTGTTTTCTTCAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCGAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGTCAGATTCTTGTTCAAGCTTGTCTCAGATTGGCTCTGATAAGGGAAAGAAACGTGTTCCTGATATGCAAGACTATGACTCGGGTGCCCAAGTTGAAGCTgagaacaagaaaatgaagaaatctAGTAAAGAAGATTAA 432 0.3843 MPRCIWNKANSSIQSKMENADEKMRFIEDPKVRNETFLKLKAEILKEYSELSTVCGAEFVVFFNLPSGETYAYGYPSVETIIDRYCSTNPVTTEKEEESDSCSSLSQIGSDKGKKRVPDMQDYDSGAQVEAENKKMKKSSKED 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4026 143 MobiDBLite consensus disorder prediction 92 143 - -
Sto5g4026 143 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Sto5g4026 143 SUPERFAMILY SRF-like 23 93 IPR036879 GO:0003677|GO:0046983
Sto5g4026 143 MobiDBLite consensus disorder prediction 128 143 - -
Sto5g4026 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Sto5g4026 143 Gene3D - 29 112 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4026 Sto-Chr5 48841747 48842713 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4026 33 98 Type I MADS-box Gene Family AT2G24840 37.879 1.05e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4026 SRF-TF 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4026 - - dzi:111308495 69.707