Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4022 ATGGGCCAAGGAATGCCATTGGACTTGTTGGATGTCTTCAAGTTCCACACAATCCATGCCTTCataggaaggaaaaagaaagttgCTCGATTCCTTGGATTAATTAAGGCTTTCCATATGGAAGAGAGTGAGAATATAAGGTTCATTGAAGACCCCAAAGCCAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAAATTTTGAAAGAATATAGCGAGCTTTCTGCCTTTTGTGGAGCAGAGTTCGCCGTCTTCTTTAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCAAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGCCTGATTCTTGTTCAAGCTTGTCTCAGATTGATTCTGATAAGGGAAAGAAACGTGTTCTTGATATGCAAGACTATGACTCGGGAGCCCAAGTTGAAGCTgagaacaagaaaatgaagaaacttAGTAAAGAAGATTAA 498 0.3755 MGQGMPLDLLDVFKFHTIHAFIGRKKKVARFLGLIKAFHMEESENIRFIEDPKARNETFLKLKAEILKEYSELSAFCGAEFAVFFNLPSGETYAYGYPSVKTIIDRYCSTNPVTTEKEEEPDSCSSLSQIDSDKGKKRVLDMQDYDSGAQVEAENKKMKKLSKED 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4022 165 MobiDBLite consensus disorder prediction 150 165 - -
Sto5g4022 165 SUPERFAMILY SRF-like 45 114 IPR036879 GO:0003677|GO:0046983
Sto5g4022 165 MobiDBLite consensus disorder prediction 114 165 - -
Sto5g4022 165 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
Sto5g4022 165 Gene3D - 51 134 IPR036879 GO:0003677|GO:0046983
Sto5g4022 165 ProSiteProfiles MADS-box domain profile. 46 99 IPR002100 GO:0003677|GO:0046983
Sto5g4022 165 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 47 163 - -
Sto5g4022 165 PANTHER MADS BOX PROTEIN 47 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4022 Sto-Chr5 48826785 48828750 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4022 55 165 Type I MADS-box Gene Family AT2G24840 30.702 2.12e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4022 SRF-TF 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4022 - K12412 twl:120014087 62.7734