Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4019 ATGGAGAATGCAAGTGAGAAGATGAGGTTCATTGAAGACCCCAAAGCCAGAAACGAAACCTTCTTGAAGTTAAAGGCTgaaattttgaaagaatttaGCGAGCTTTCTGCCTTTTGTGGAACAGAGTTTGCCGTTTTCTTTAATTTACCATCAGGAGAAACTTACGCCTATGGCTACCCTTCTGTCGAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGTCTCATTTACAAACTACAAAATCCAACTCTCAGACTCGGATTCGTTCTGATAAGGGAAAGAAACGTGTTCTTGATATGCAAGACTATGACTCGGGTGCCCAAGTTGAAGCTGAgaacaaaaaaatgaagaaacttACTTGGTTGGAAGCTATACCTGCGATGGAGTCTGACCATACTCCTCATATTCTTATATTTTTCAACCATACTCCTAAAACCTGTAAGTCTTTTAAGTTTGAGCAATTTCGGTTGGAGAATGAGCAGTGTATCCCTATCATTCGAGATGCCtgGTTGAAGAATCGTCATGCTCTTATATCCAGTGAGATCTCGATTGAGGGTAATATGGATGAAATTAGAGATTTTAAGAGGAAAATTGCGAAGCTCCGTAGACAAGAAGAACAATTTTGGGAATCTCGTGCTCATAACAAATGGTTGAGAAGTGGGGATAAGAATAAGCGTTTCTTTCACGCTGTCACAATGCAGAGAAGGAGTATCAACCGGATTTCTCATATTCATTTGGAGAATGGAGAGTGGGAGAATGAGAGGCCCGCATGA 798 0.3922 MENASEKMRFIEDPKARNETFLKLKAEILKEFSELSAFCGTEFAVFFNLPSGETYAYGYPSVETIIDRYCSTNPVTTEKEEESHLQTTKSNSQTRIRSDKGKKRVLDMQDYDSGAQVEAENKKMKKLTWLEAIPAMESDHTPHILIFFNHTPKTCKSFKFEQFRLENEQCIPIIRDAWLKNRHALISSEISIEGNMDEIRDFKRKIAKLRRQEEQFWESRAHNKWLRSGDKNKRFFHAVTMQRRSINRISHIHLENGEWENERPA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4019 265 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 8 156 - -
Sto5g4019 265 Coils Coil 192 212 - -
Sto5g4019 265 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g4019 265 MobiDBLite consensus disorder prediction 76 100 - -
Sto5g4019 265 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Sto5g4019 265 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto5g4019 265 SUPERFAMILY SRF-like 7 86 IPR036879 GO:0003677|GO:0046983
Sto5g4019 265 PANTHER MADS BOX PROTEIN 8 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4019 Sto-Chr5 48802748 48804237 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4019 11 92 Type I MADS-box Gene Family AT5G60440 33.333 5.65e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4019 SRF-TF 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4019 - - ahf:112785670 93.9745