Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4016 ATGGAGAATGCAGATGAGAAGATGAGGTTCATTGAAGACCCCAAAGTCAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAAATTTTGAAAGAATATAGCGAGCTTTCTGCCGTTTGTGGAGTAAAGTTCGCCGTTTTCTTCAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCAAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGTCAGATTCTTGTTCAAGCTTGTCTCAGATTGGTTCTGATAAGGGAAAGAAACGTGTTCCTGATATGCAAGACTATGACTCGGGTGCCCAAGTTGAAGCTGAgaacaaaaaaatgaagaaaactaCTTGGTTAGAATCTGTACCTGCGATGGAGTCTGATCATACTCCTCTTATTCTTATATTTTCCAACCATATTCTTAAAACCTGtaagtcttttatgtttgagcAACTTTGGCTGGAGAATGAGCAGTGTATCCCTATCATTCGAGATGCCTGTGAGATCTCGGTTGAGGGTAATATGGATGAAATTAGATATTTTAAGAGGAAAATTGCGAAGCTCTGTAGACAAGAAGAACAATTTTGGGAATCTCATGCTTGTAACAAATGGTTGAGAAGTGGGGATAAGAATACGCGTTTCTTTCATGCTGTCACAATGCAGAGGAGTATCAACCGGATTTCTCATATTCAGTTGGAGAATGGAGAGTGGCAAAATGAGAGGCTCACATTATGGAAGCTTTCTCAAATGATGCCATGTTCTTTGCTTTTGCCTGAGATTCGGAGGTTTATTCGTTGGTGA 822 0.3869 MENADEKMRFIEDPKVRNETFLKLKAEILKEYSELSAVCGVKFAVFFNLPSGETYAYGYPSVKTIIDRYCSTNPVTTEKEEESDSCSSLSQIGSDKGKKRVPDMQDYDSGAQVEAENKKMKKTTWLESVPAMESDHTPLILIFSNHILKTCKSFMFEQLWLENEQCIPIIRDACEISVEGNMDEIRYFKRKIAKLCRQEEQFWESHACNKWLRSGDKNTRFFHAVTMQRSINRISHIQLENGEWQNERLTLWKLSQMMPCSLLLPEIRRFIRW 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4016 273 MobiDBLite consensus disorder prediction 80 104 - -
Sto5g4016 273 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Sto5g4016 273 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto5g4016 273 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g4016 273 SUPERFAMILY SRF-like 7 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4016 Sto-Chr5 48792562 48794103 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4016 17 90 Type I MADS-box Gene Family AT2G24840 29.730 9.31e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4016 SRF-TF 1.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4016 - - qsu:112011598 84.7297