Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4014 ATGTGCCAAGGAATGCCATTGGACTTGCTGGACGTCTTCAAGTTCCCCACAATTCATGCCTTCataggaaggaaaaagaaagttgCTCGATTCCTTGGATTAATTAAGGCTTTCCATATGGAAGACAAAAATTCCTCAATTCAATCCAAAATGGAGAATGCAGATGAGAAGATGAGGTTCATTGAAGACCCCAAAGTCAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAAATTTTGAAAGAATATAGCGAGCTTTCTGCCGTTTGTGGAGTAAGGTTCGCCGTTTTCTTCAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCAAGACCATTATTGATAGGTATTGTTCTACAAACCCTGTTACTACCGAAAAAGAAGAGGAGTCAGATTCTTGTTCAAGCTTGCCTCAGATTGGTTCTGATACGGGAAAGAAACGTGTTCTTGATATGCAAGACTATGACTCGGGAGCCCAAGTTGAAGCTgacaacaagaaaatgaagaaacttAGTAAAGAAGATTAA 534 0.3764 MCQGMPLDLLDVFKFPTIHAFIGRKKKVARFLGLIKAFHMEDKNSSIQSKMENADEKMRFIEDPKVRNETFLKLKAEILKEYSELSAVCGVRFAVFFNLPSGETYAYGYPSVKTIIDRYCSTNPVTTEKEEESDSCSSLPQIGSDTGKKRVLDMQDYDSGAQVEADNKKMKKLSKED 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4014 177 MobiDBLite consensus disorder prediction 126 177 - -
Sto5g4014 177 ProSiteProfiles MADS-box domain profile. 51 111 IPR002100 GO:0003677|GO:0046983
Sto5g4014 177 Gene3D - 63 141 IPR036879 GO:0003677|GO:0046983
Sto5g4014 177 SUPERFAMILY SRF-like 57 126 IPR036879 GO:0003677|GO:0046983
Sto5g4014 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 107 IPR002100 GO:0003677|GO:0046983
Sto5g4014 177 MobiDBLite consensus disorder prediction 162 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4014 Sto-Chr5 48784264 48786738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4014 67 177 Type I MADS-box Gene Family AT2G24840 28.070 2.24e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4014 SRF-TF 1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4014 - K25100 tua:125525093 63.5438