Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4012 ATGGAGAATGCAAGTGAGAAGATGAAGTTCATTGAAGACCCCAAAGCTAGAAACGAAACCTTCTTAAAGTTAAAGGCTGAAATGTTGAAAGAAGTTAGTGAGCTTTCTGCCTTTTATGGAGCAGAGTTCgccattttctttaatttacctTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCGAGACCATTATCGACAGGTATTGTTCTACAAACCTTGTTACTACCGAAAAAGAAGAGGAGCCTCATTTACAAACTACAAAATCCAACTCTCAGACTCGGATTGGTTCTGATAAGGGAAAGAAACGTGTTCTTGATATGCAAGACTATGACTCAGGTGCCCAAGTTGAAGCTgagaacaagaaaattaagaaactTACTTGGTTGGAAGCTATACCTGCGATGGAGTTTGACCATACTCCTCTTATTCTTATATTTTTCAACCATAATCCTAAAACCTGTAAGTCTTTTAAGTTTGAGCAATTTCGGTTGGAGAATGAGCAGTGTATCCTTATCATTCGAGATGCCTGGTTGAAGAATTGTCATGCTCTTATATCCAACGAGATCTCGATTGAGGGTAATATGGATGAAATTAGATATTTTAAGAGGAAATTTGCGAAGCTCCGTAGACAAGAAGAACAATTTTGGGAATCTCATGCTCGTAACAAATGGTTGAGAAGTGGGGATAAGAATACGCGTTTCTTTCACGCTGTCACAATGCAGAGAAGGAGAATAAACCGGATTTCTTAG 753 0.3745 MENASEKMKFIEDPKARNETFLKLKAEMLKEVSELSAFYGAEFAIFFNLPSGETYAYGYPSVETIIDRYCSTNLVTTEKEEEPHLQTTKSNSQTRIGSDKGKKRVLDMQDYDSGAQVEAENKKIKKLTWLEAIPAMEFDHTPLILIFFNHNPKTCKSFKFEQFRLENEQCILIIRDAWLKNCHALISNEISIEGNMDEIRYFKRKFAKLRRQEEQFWESHARNKWLRSGDKNTRFFHAVTMQRRRINRIS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4012 250 MobiDBLite consensus disorder prediction 78 102 - -
Sto5g4012 250 SUPERFAMILY SRF-like 7 79 IPR036879 GO:0003677|GO:0046983
Sto5g4012 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g4012 250 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Sto5g4012 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4012 Sto-Chr5 48774055 48775497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4012 17 123 Type I MADS-box Gene Family AT2G24840 32.710 1.84e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4012 SRF-TF 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4012 - - egr:108958207 87.8113