Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4009 ATGGAGAATGCAGGTGAGAATATAAGGTTCATTGAAGACCCCAAAGCCAGAAACGAAACCTTGTTGAAGTTAAAGGCTGAAATTTTGAAAGAATATAGCGAGCTTTCTGCCTTTTGTGGAGCAGAGTTCGCCGTTTTCTTTAATTTACCTTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCAAGACCATTATTGACAGGTATTGTTCTACAAACCCTGTTACTACTGAAAAAGAAGAGGAGCTTGATTCTTGTTCAAGCTTGTCTCAGATTGGTTCTGATAAGGGAAAGAAACGTGTTCTTGATATGCAAGACTATGACTCGGGAGCCCAAGTTGAAGCTgagaacaagaaaatgaagaaacttACTTGGTTAGAATCTATACCTGCGATGGAGTCTGACCATACTCCTCTTATTCTTATATTTTCCAACCATACTCCTAAAACCTGtaagtcttttatgtttgagcAACTTTGGCTGGAGAATGAGCAGTGTATCCCTATCATTCGAGATGCCTGGGCCGTTGGATGGCATGCCTCTGTTCCTCTGCTGCAACTGTACTGA 567 0.3933 MENAGENIRFIEDPKARNETLLKLKAEILKEYSELSAFCGAEFAVFFNLPSGETYAYGYPSVKTIIDRYCSTNPVTTEKEEELDSCSSLSQIGSDKGKKRVLDMQDYDSGAQVEAENKKMKKLTWLESIPAMESDHTPLILIFSNHTPKTCKSFMFEQLWLENEQCIPIIRDAWAVGWHASVPLLQLY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4009 188 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g4009 188 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Sto5g4009 188 SUPERFAMILY SRF-like 7 76 IPR036879 GO:0003677|GO:0046983
Sto5g4009 188 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4009 Sto-Chr5 48757143 48759373 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4009 11 119 Type I MADS-box Gene Family AT2G24840 30.275 9.20e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4009 SRF-TF 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4009 - K12412 twl:120014087 58.9214