Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4008 ATGAAAGGCCATCCCGGCTCTGGCAAAAGCACTTTGGCTCATTCCATAGCCTCTTCCCTTCGAATCCCTCTCATAGACAAAGACGACATCCGCGACTCCACCGTATCCCTCCAACACCTCCCCACACCCCCGCCTTCCTCCCTCCTCAACGACCTCTCCTACGACGCCATCTGGCGCCTCGCCTCCACTCAGCTCCGCCTCGGCCTCGGCGTCGTCATCGACTCGCCCCTCTCACGCCGCGCCCACCTCGATCGGCTCGTCAGTATCGCCGAGTCCTCCGGCGCGCGGCTTGTTGTCGTCGAGTGCAAGCCGAGCGACCGGGACGAGTGGCGGCGCAGGCTGGAGCGGCGCGCCGGGAGCTCGCACAAGCCGGCCACGTGGCGGGATTTGGAGAGGCTTGTGGAAGAGTACGGCGGGTGTACGGAGTACGATGTGGGTGATGTGCCGAAGATTGTGGTGGATACTACAGCGTCGGTTGGGAAGGAGGAGATGTGTTCTGGTGTGGTGGAGTTCATCGCGGCTCATGCTTATAGCAAAAATATGGGCCAAGAAATGCCACTAGACTTGCTGGATGTCTTCAAGTTCCACACAATCCATGCCTTCataggaaggaaaaagaaagttgCTCGATTCCTTGGATTAATGAAGGCTTTCTATATTGAAGAGAAAAATTCCTCAATTCAATCCAAAATGGAGAATGCAAGTGAGAAGATGAAGTTCATTGAAGACCCCAAAGCCAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAAATGTTGAAAGAAGTTAGCGAGCTTTCTGCCTTTTATGGAGCAGAGTTCgccattttctttaatttacctTCGGGAGAAACTTACGCCTATGGCTACCCTTCTGTCGAGACCATTATCGACAGGTATTGTTCTACAAACCCTATTACTACCGAAAAAGAAGAGGAGCCTCATTTACAAACTACAAAATCCAACTCTCAGACTCAGATTGGTTCTGATAAGGGAAAGAAACGTGTTCTGGATATGCAAGACTATGACTCGGGTGCCCAAGTTGAAGCTgagaacaagaaaattaagaaactTAGTAAGGAAGATTAA 1086 0.4917 MKGHPGSGKSTLAHSIASSLRIPLIDKDDIRDSTVSLQHLPTPPPSSLLNDLSYDAIWRLASTQLRLGLGVVIDSPLSRRAHLDRLVSIAESSGARLVVVECKPSDRDEWRRRLERRAGSSHKPATWRDLERLVEEYGGCTEYDVGDVPKIVVDTTASVGKEEMCSGVVEFIAAHAYSKNMGQEMPLDLLDVFKFHTIHAFIGRKKKVARFLGLMKAFYIEEKNSSIQSKMENASEKMKFIEDPKARNETFLKLKAEMLKEVSELSAFYGAEFAIFFNLPSGETYAYGYPSVETIIDRYCSTNPITTEKEEEPHLQTTKSNSQTQIGSDKGKKRVLDMQDYDSGAQVEAENKKIKKLSKED 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4008 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 155 IPR027417 -
Sto5g4008 361 ProSiteProfiles MADS-box domain profile. 231 291 IPR002100 GO:0003677|GO:0046983
Sto5g4008 361 Gene3D - 243 325 IPR036879 GO:0003677|GO:0046983
Sto5g4008 361 PANTHER OS07G0160300 PROTEIN 1 179 - -
Sto5g4008 361 Gene3D - 1 176 IPR027417 -
Sto5g4008 361 MobiDBLite consensus disorder prediction 309 361 - -
Sto5g4008 361 SUPERFAMILY SRF-like 237 311 IPR036879 GO:0003677|GO:0046983
Sto5g4008 361 PANTHER OS07G0160300 PROTEIN 1 179 - -
Sto5g4008 361 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 240 287 IPR002100 GO:0003677|GO:0046983
Sto5g4008 361 Pfam AAA domain 1 124 - -
Sto5g4008 361 MobiDBLite consensus disorder prediction 346 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4008 Sto-Chr5 48732879 48737054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4008 241 359 Type I MADS-box Gene Family AT5G60440 30.952 9.91e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4008 AAA_33 3.8e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4008 - - pvy:116114797 234.958