Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g4004 ATGGAGAACGCAGGTGAGAAGATGAGGTTCATTGAAGACCCCATAGCTAGAAACGAAACCTTCTTGAAGTTAAAGGCTGAACTTTTGAAAGAAGCCAGCGAGCTTTCTACCTTGTGTGGAGCAGAGGTAGCCattttcttcgattcaccttcgggAGAAACTTACGCCTATGGCTACCCTTCTATCGAGACCATTATTGGCAGACTCCGATTGGTTCTGATAAAGGCAAGAAACCTGTTGTTGATATGTAAAACTATGACTCGGGTGCCCAAGTGGAAGATGAGAACAGGAAAATGA 297 0.4108 MENAGEKMRFIEDPIARNETFLKLKAELLKEASELSTLCGAEVAIFFDSPSGETYAYGYPSIETIIGRLRLVLIKARNLLLICKTMTRVPKWKMRTGK 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g4004 98 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 Gene3D - 15 83 IPR036879 GO:0003677|GO:0046983
Sto5g4004 98 PANTHER MADS BOX PROTEIN 8 69 - -
Sto5g4004 98 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sto5g4004 98 SUPERFAMILY SRF-like 7 70 IPR036879 GO:0003677|GO:0046983
Sto5g4004 98 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL61 8 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g4004 Sto-Chr5 48702195 48702588 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g4004 8 70 Type I MADS-box Gene Family AT1G47760 38.095 3.36e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sto5g4004 SRF-TF 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g4004 - - itr:116017862 62.003