Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3992 ATGGGTTTGTCACATAAAGCTGGAATTAATGACAAAAGTAACGAAGGGAAGTCTTGGAATTCAAATAGAATATCAAATCTTTCTGTAATTCTCACAGATCCACAGGTTCTAGAATGTTTTGTTTGCTTCGAACCCTTAAGAGCTCCAATTTTCCAGTGTGAGAATGGTCACTCTTCTTGCTCTTCTTGCTGTCTCAAGCTTAACAATATATGTGCCTTGTGTTCCAAACCCACAGGTCGTATCAGGAACCTATCCATCGAGAAGCTTCTAGAATCTCTTCGAATCTCATGTCCCAACGCCAAATACGGCTGCAAAGAATATTTGAGTTACATAAGAAATGGTAGTAGTGAATGTGATCACCAAAACGCATGCCCTTATGTGCCGTTTTCATGCCTCTTTTCTGGATGCGACTATGTTGTGTCGTACACGGACTTGTGCCATCACTTGACCACCAATCACAAAGATTCCACGCTGTGTTTCGCGTACAACGAGAATGTGAGTGTGTCGTTTAATACGGAGGACGAAAACGACGTTGTCGTCGTTCTTTGCGAGAGAAATTGTGATGATGTGTTTGTTGTGAGTAGTAAGGTTGTTGAGAATGTGGGGCGTGTGGTGTACGTCAGCTTCGTTGGGCTCAAGTCATGGGAGCATCGTTTATGTAATTATAGTGTTTTTGCCAAGAGTTTTGATTGTCAAAGCTCAGTGTCGTTTATAGGTTGTGCGAAGAATATGCAGCATGTCGTTGACGTTGGTCCAGGTGCTTTAAGGGATTGCGTTTTGAttccattttcatattttggaaGTATTTACGGAGAGATTGAGTGTTTAAAGGTCGGGACCCACAATCGAACCAAGCAAGACACAATAGAGATAACACGAATCTTCTCATCACGTGATAGTTGGATAAACTGGCCATCACATGATGATTTGACCTGA 936 0.4135 MGLSHKAGINDKSNEGKSWNSNRISNLSVILTDPQVLECFVCFEPLRAPIFQCENGHSSCSSCCLKLNNICALCSKPTGRIRNLSIEKLLESLRISCPNAKYGCKEYLSYIRNGSSECDHQNACPYVPFSCLFSGCDYVVSYTDLCHHLTTNHKDSTLCFAYNENVSVSFNTEDENDVVVVLCERNCDDVFVVSSKVVENVGRVVYVSFVGLKSWEHRLCNYSVFAKSFDCQSSVSFIGCAKNMQHVVDVGPGALRDCVLIPFSYFGSIYGEIECLKVGTHNRTKQDTIEITRIFSSRDSWINWPSHDDLT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3992 311 SUPERFAMILY TRAF domain-like 92 251 - -
Sto5g3992 311 Pfam Seven in absentia protein family 81 211 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sto5g3992 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 269 IPR044286 -
Sto5g3992 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 269 - -
Sto5g3992 311 ProSiteProfiles Zinc finger SIAH-type profile. 92 154 IPR013010 GO:0008270
Sto5g3992 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3992 Sto-Chr5 48566130 48567474 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3992 35 154 C3H Transcription Factor Family AT2G41980 36.885 1.15e-18 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3992 K04506 - cmos:111452508 168.703