Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3986 ATGGCCAAGGAAGTGAAGAAGCACGTAGATGTGAAGGAAATGAAGTATAATACCAAATGTCGTAATGGTCACATTGCATGCTTTTTCTGTTGTTCTTCTAAATCTAAGCTTCCCGTAAAAATTTGCCCTACGTGTTCCGAAGAAATTGGTTCTATAAGAAATCGATTGGTCGAGAACATTCTAGAAGCTGCGCAATTTCGCTGCGCCTACGAAGAATATGGATGCAAGGAGACACTAAATTACCACATGAAGAAAGTGCATGCAAATTTTTGCAAGTACGTAAGATTTTCTTGCCCATGTTGTGACTATGTTAATCGTGACGAAAACTTGTACAAGCACTTCAGCGACAAACACAATGATTCCGTCGTGCGTTTTAAGTACGAGAACTTATTCTCTGTGACCATAAATAAGGTTCAAAAAGAGGTGTTTTTCCTTCAGAGTGACAAATTTGGTGTTATTTTTGTTCTGAATAATGTTGTGGTTGTTgatgaacgtgtgggaaatgctGTTTGTGTTGTTTGCATTGGTCAAGGATCGATAAAAGGAAgttataattactttttaagTGCTGGAAATTGTTGGGATGGgagtttgaagtttgaagatACTGTGAAGGTAAAACAAGTCAAAGTTGTTGCTGAAAATTTTGATGACGTTATTGCTGCCTCATCCAATTACCTTATcattccttcttctttctttggtTTTGGTGGAAAACTAAAGCTTGATATCAAAATTACTCAAGGATGA 750 0.3347 MAKEVKKHVDVKEMKYNTKCRNGHIACFFCCSSKSKLPVKICPTCSEEIGSIRNRLVENILEAAQFRCAYEEYGCKETLNYHMKKVHANFCKYVRFSCPCCDYVNRDENLYKHFSDKHNDSVVRFKYENLFSVTINKVQKEVFFLQSDKFGVIFVLNNVVVVDERVGNAVCVVCIGQGSIKGSYNYFLSAGNCWDGSLKFEDTVKVKQVKVVAENFDDVIAASSNYLIIPSSFFGFGGKLKLDIKITQG 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3986 249 Pfam Seven in absentia protein family 52 219 IPR018121 GO:0005737|GO:0006511|GO:0007275
Sto5g3986 249 ProSiteProfiles Zinc finger SIAH-type profile. 63 119 IPR013010 GO:0008270
Sto5g3986 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 114 IPR013083 -
Sto5g3986 249 SUPERFAMILY TRAF domain-like 64 245 - -
Sto5g3986 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 247 - -
Sto5g3986 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 19 247 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3986 Sto-Chr5 48510719 48511558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3986 19 118 C3H Transcription Factor Family AT2G41980 33.333 4.54e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3986 K04506 - qsu:112007121 142.124