Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3985 ATGCTTTCTCCAGCCGCGAAGCCTCCCCCATTCTCGCCGACGATGTCTCCGAGATGGAATAGTTCTTCCTCGACTCCATCTCCAAGCTCCTCACCAGAAATGTCTAAGGCACAGAAGATGCAGGATGAAGATGTCCAAGCAATTTCTAATGATGAACAAGATTGCTCTATCATTTGGTTTGACCCAAAAGCAATTGATCTTCTTGATTGTCCAATATGCCTAGAACCCTTAAAACCCCCTATTTCTCACTGTCACAATGGTCACATTCTTTGTTCCTCTTGCTGTACCCACCTCAAGAATATTTGCCCCATATGTACCACTTCAATTGGTTCTACAAGGATCCGAACCCTCGAGAACCTTCTAGAATCCACTAAATGTTTCTGCCCCAACAAGAAGTTTGGGTGCGAAGAAACAATTAGTTACTACGACAGAAATGTGCATGCAAGAACATCGTGCACGTACGTACCGTGTACTTGTCCGTGTTGTGACCACTTCGTCGACTCGTACAAGAAATTGTATGTTCACTTAAGCGACGAACACAAAGGTCGTGCCATTTGTTTTAGTTACAATGAATTCTTGCTTGTGACCTTAAATAATAAGGTTAAAAATGAGATTTTTGTGCTACAAAGGGGACGAGGTGATGTTGTGTTTGTTTTGAATAATGTTGTTGTGGATCAACATGTGGGGAATGGGTGGAATGCTGTTTTTGTTGTTTGTATCGGGTCGAGGTCGTTGAGTGATGAGAGGTTGTTCAAGTATACGATAGCAATCGTTGGAGATGTTGAGGAGAGGTTTATGATATTTCAAGATCGGGTGAAGATCGAACGAAAGAATGttgatattaataattttgggAATATTACTGCCTCAACGGAATATTTCCTCGTTCCTTGTTCTTTCTTTGATTCAAgtggaaaattgaatattagtGTCAAAATAACGGAAGAACTCGAGGAAGATGGTGTTGTGACTTCCTACTGa 981 0.4037 MLSPAAKPPPFSPTMSPRWNSSSSTPSPSSSPEMSKAQKMQDEDVQAISNDEQDCSIIWFDPKAIDLLDCPICLEPLKPPISHCHNGHILCSSCCTHLKNICPICTTSIGSTRIRTLENLLESTKCFCPNKKFGCEETISYYDRNVHARTSCTYVPCTCPCCDHFVDSYKKLYVHLSDEHKGRAICFSYNEFLLVTLNNKVKNEIFVLQRGRGDVVFVLNNVVVDQHVGNGWNAVFVVCIGSRSLSDERLFKYTIAIVGDVEERFMIFQDRVKIERKNVDINNFGNITASTEYFLVPCSFFDSSGKLNISVKITEELEEDGVVTSY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3985 326 ProSiteProfiles Zinc finger RING-type profile. 70 106 IPR001841 -
Sto5g3985 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 176 IPR013083 -
Sto5g3985 326 SUPERFAMILY RING/U-box 69 111 - -
Sto5g3985 326 CDD RING-HC_SIAHs 68 105 - -
Sto5g3985 326 MobiDBLite consensus disorder prediction 1 15 - -
Sto5g3985 326 ProSiteProfiles Zinc finger SIAH-type profile. 123 181 IPR013010 GO:0008270
Sto5g3985 326 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 20 315 IPR044286 -
Sto5g3985 326 SUPERFAMILY TRAF domain-like 125 246 - -
Sto5g3985 326 MobiDBLite consensus disorder prediction 1 44 - -
Sto5g3985 326 MobiDBLite consensus disorder prediction 16 36 - -
Sto5g3985 326 Pfam Seven in absentia protein family 116 280 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3985 Sto-Chr5 48503795 48508923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3985 66 181 C3H Transcription Factor Family AT2G41980 35.294 1.01e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3985 K04506 - qsu:112007121 162.54