Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3980 ATGGAGGATGTTTGGCTCGTGTTGTTCGGTACGGTGGTGGGGAAGCAGAGGAGGGCGTTGTTGAAGTTGAAGCTGTTTCTCGTAATGCCGCTGCTCTTGCTTCTCTCGTCATTCGTTTCGCCTCTCACCGAGgaaggtgtgtgtgtgtgtgtgtatccGTTGTTATTCTTGCGACAAACGTTAATGACAATCAAGGCTTCTTTCAGCAACGTAGCAGATGCCTTGCTTGATTGGGAGGACGTTCACAATGATGACTTTTGTTCTTGGCGTGGAGTTTACTGTGATAATAGCAGCGTTACTGTGCTTTCTCTGAACCTGTCAAGTTTGAACTTGGGTGGTGAGATATCTCCAGCCATTGGCGATTTAAGAAACTTGCAATCCTTAGATCTTCAGGGGAATAAATTAAGTGGTCAAATCCCAGATGAAATTGGCAACTGCCCTTCCCTTATCCATTTGGATTTGTCTGATAACCAGTTGTATGGGGATGTGCCATTCTCCCTGTCAAAGCTAAAGCTGCTTGAGTTTTTAAATCTAAAGAATAATCAGTTGACTGGTCCTATTCCTTCAACATTAACCCAGATTCCAAATCTAAAAACCATTGATCTTGCTCGAAATCAACTCACCGGTGAGATACCGAGATTGCTTTATTGGAATGAAGTCCTGCAATATCTAGGGTTGCGAGGGAACTCACTGAGTGGAACCCTGTCTCCTGATATTTGTCAATTAACTGGACTGTGTGATGTGAGAGGCAACAATTTGACAGGAACTATACCTGAAAGCATTGGGAACTGCACAAGTTTTGAAATTTTGGATATATCATATAACCAGATTAGTGGGGTGATTCCTTACAACATCGGGTTCCTGCAAGTGGCAACTTTGTCGCTTCAAGGAAATAAGTTAACTGGGAGGATCCCAGATGTGATTGGTTTGATGCAAGCACTTGCTATCTTGGATTTGAGTGAGAATGAGCTTGTGGGACCCATCCCTCCTATACTAGGCAATTTGTCTTTCACTGGAAAGCTGTACCTCCATGGTAACATGCTTTCTGGTACCATACCACCAGAACTTGGCAACATGTCTAAACTAAGCTACCTGCAATTGAATGACAACCAACTAGTTGGTAGGATTCCAAATGAGCTTGGGAAGCTTGAACATTTGTTTGAATTAAATCTTGCCAATAATCATCTTGAAGGACCTATACCACATAACATAAGCTCTTGCACGGCCTTGAATCAGTTcAATGTGCATGGTAATCACTTGAGTGGATCCATTCCCTTGAGCTTTCGTAACCTTGAGAGTTTGACTTACCTGAATCTCTCTGCAAACCACTTCAAAGGGAAAATACCTGTTGAACTTGGCCATATTATTAATCTTGATACGCTGGATCTGTCACGCAATAATTTTTCAGGTTCTGTTCCTGCATCTGTTGGTGATTTAGAGCACCTTCTGACACTGAACTTGAGCCTTAACCATCTTGATGGTTCATTGCCTGCtgaatttgggaatttgagAAGTATTCAGATTATTGATATTTCCTACAATAATCTTTCTGGTAGCATCCCTCAGGAAATGGGTCAGCTGCAGAACCTTGTGTCTCTGATACTGAACAACAATGTCTTGAGTGGGAAAATTCCAGATCAGCTAGCTAATTGCCTGAGTCTTTCCTCCTTAAATGTCTCTTACAATAACCTATCTGGAATTATTCCTCCAATGAGGAATTTCTCACGGTTTTCAGCTGACAGTTTCATTGGAAATCCTTTATTATGTGGGAAAAGGTTAGGGTCAATGTGTGGTTCATGCATCCCCAAATCCAGAGATCCAGCCAATCAAAGAATCTCGCAAAAGGATCTAGCAGAACTGTACAAGGCATGTCCCCCTAAACTTGTAATCCTTCATATGGATATGGCGTTGCATACCTTTGATGACATAATGAGAGTTACTGAGAATCTCAGTGAGAAATATATCATAGGGTATGGTGCCTCAAGTACAGTATACAAGTGTAATTTGAAAGGTTCCCGACCAATTGCAATTAAGCGACTTTACAACCAACATCCACACAACTTGCGGGAGTTTGAAACAGAACTAGAAACTATTGGCAGCATCAGGCATAGAAACCTTGTGACCTTGCATGGTTATGCACTGACGCCCAATGGAAATCTCCTTTTCTATGACTATATGGACAATGGCTCTCTTTGGGATCTTCTTCATGGTCCCTTGAAGAAGGTGAAACTTGATTGGGAAACACGCTTGAGGATTGCTGTGGGAGCTGCTGAGGGTCTTGCTTATCTCCACCATGATTGTAACCCTCGAATCATTCACAGGGATATAAAGTCCTCAAATATTTTGTTGGATGAGAACTTTGAGCCTCACCTTTCTGATTTTGGCATTGCCAAAAGCATATCGACAACAAGAACTCATGCATCAACATATGTACTCGGAACAATAGGATACATTGATCCTGAATATGCCCAGACGTCACGGCTGAATGAAAAATCCGATGTCTATAGCTTTGGCGTTGTTCTACTTGAGCTACTGACCGGAAAGAAAGCAGTGGATAATGAGTCCAACTTGCATCAATTGATACTGTCCAAGGCAGATAACAACACTGTAATGGAGGCCGTGGATCCGGAGGTCTCCGTAACCTGCATGGATCTGGCCCATGTTAAGAAGACCTTTCAACTTGCCTTGCTTTGCACGAAAAGAAACCCTTCTGATAGGCCTACCATGCATGAAGTTGCTAGGGTTTTGGTGTCACTTCTGCCTTCTCCCCCCACTAAGACGTGTTCTGCTCCGGTGAAGACCGCTGATTATGCGCGATTTGTGATCGAAAAGGGGCGACAACAAAGGATGGAATTGCTGCATTCCAAGCAAGAGAACAATTCCTCTGATGCTCAGTGGTTTGTTCGCTTTGGGGATGTATCCAAGAACACCCTCTAA 2937 0.4225 MEDVWLVLFGTVVGKQRRALLKLKLFLVMPLLLLLSSFVSPLTEEGVCVCVYPLLFLRQTLMTIKASFSNVADALLDWEDVHNDDFCSWRGVYCDNSSVTVLSLNLSSLNLGGEISPAIGDLRNLQSLDLQGNKLSGQIPDEIGNCPSLIHLDLSDNQLYGDVPFSLSKLKLLEFLNLKNNQLTGPIPSTLTQIPNLKTIDLARNQLTGEIPRLLYWNEVLQYLGLRGNSLSGTLSPDICQLTGLCDVRGNNLTGTIPESIGNCTSFEILDISYNQISGVIPYNIGFLQVATLSLQGNKLTGRIPDVIGLMQALAILDLSENELVGPIPPILGNLSFTGKLYLHGNMLSGTIPPELGNMSKLSYLQLNDNQLVGRIPNELGKLEHLFELNLANNHLEGPIPHNISSCTALNQFNVHGNHLSGSIPLSFRNLESLTYLNLSANHFKGKIPVELGHIINLDTLDLSRNNFSGSVPASVGDLEHLLTLNLSLNHLDGSLPAEFGNLRSIQIIDISYNNLSGSIPQEMGQLQNLVSLILNNNVLSGKIPDQLANCLSLSSLNVSYNNLSGIIPPMRNFSRFSADSFIGNPLLCGKRLGSMCGSCIPKSRDPANQRISQKDLAELYKACPPKLVILHMDMALHTFDDIMRVTENLSEKYIIGYGASSTVYKCNLKGSRPIAIKRLYNQHPHNLREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMDNGSLWDLLHGPLKKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIIHRDIKSSNILLDENFEPHLSDFGIAKSISTTRTHASTYVLGTIGYIDPEYAQTSRLNEKSDVYSFGVVLLELLTGKKAVDNESNLHQLILSKADNNTVMEAVDPEVSVTCMDLAHVKKTFQLALLCTKRNPSDRPTMHEVARVLVSLLPSPPTKTCSAPVKTADYARFVIEKGRQQRMELLHSKQENNSSDAQWFVRFGDVSKNTL 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3980 978 Gene3D Ribonuclease Inhibitor 474 599 IPR032675 -
Sto5g3980 978 Gene3D Ribonuclease Inhibitor 377 473 IPR032675 -
Sto5g3980 978 Gene3D Ribonuclease Inhibitor 58 216 IPR032675 -
Sto5g3980 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 771 783 IPR008271 GO:0004672|GO:0006468
Sto5g3980 978 ProSiteProfiles Protein kinase domain profile. 650 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g3980 978 ProSitePatterns Protein kinases ATP-binding region signature. 656 678 IPR017441 GO:0005524
Sto5g3980 978 Gene3D Ribonuclease Inhibitor 217 288 IPR032675 -
Sto5g3980 978 Gene3D Ribonuclease Inhibitor 289 376 IPR032675 -
Sto5g3980 978 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Sto5g3980 978 Pfam Leucine rich repeat 457 516 IPR001611 GO:0005515
Sto5g3980 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 59 606 - -
Sto5g3980 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 618 952 - -
Sto5g3980 978 SUPERFAMILY Protein kinase-like (PK-like) 632 916 IPR011009 -
Sto5g3980 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 618 952 - -
Sto5g3980 978 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 59 606 - -
Sto5g3980 978 SMART LRR_typ_2 479 502 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 170 193 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 359 382 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 431 455 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 383 407 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 122 146 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 527 551 IPR003591 -
Sto5g3980 978 SMART LRR_typ_2 194 218 IPR003591 -
Sto5g3980 978 Gene3D Phosphorylase Kinase; domain 1 614 725 - -
Sto5g3980 978 SUPERFAMILY RNI-like 85 329 - -
Sto5g3980 978 SMART serkin_6 650 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g3980 978 Pfam Leucine Rich repeat 263 279 IPR001611 GO:0005515
Sto5g3980 978 Pfam Protein kinase domain 653 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto5g3980 978 SUPERFAMILY RNI-like 247 568 - -
Sto5g3980 978 Gene3D Transferase(Phosphotransferase) domain 1 726 929 - -
Sto5g3980 978 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3980 Sto-Chr5 48464715 48470933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3980 124 978 Receptor kinase-like Gene Family AT5G07180 75.959 0.0 1311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Sto5g3980 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3980 K20718 - gmx:100811653 1484.16