Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3958 ATGAAAAATAGTGTTCCTCCTTGCAATTTTCAGAGTAATAACAGTTTCACCAGTCAAAAGAATCCCATGGGGCAGGACCAAGAAATTGTAGAGCTCCTATGGCAAAATGGACAGGTAGTTTTGAACAGCCAAACACATAAGAAACCAGTTTTGAGGACTAATAATGGATCTTATGGTAACAATTTGAGTAATTTGTTTCAAGAAGATGAGACAGTCTCATGGATTGATCAATACCCACTTGAAGATCCATTGGAAAGAGAGTTATGTTCAAGCTTCTTACCTGATAAGCCAACTCCAAGATTTCATTTTCCTGATTCATCTCATCAGAAAAACAATGATTTTTCACAAAATGTCCTCAATTTTGCTCAAAATCGAGAAGTGAGCAGGATATCGGCTGAGGAGCCTGAAACCTTTAGGGATGATGGTATTCAGAGAACATGTCCAAAGGGTGAAAAAGGGAAATCACAAACACACGAAACAACGGTAACTTCGTCCTCGGGTGCCTCGGGGAGTAGTCTTCGAAAAACTTGCTGCCGATCTACTAGAATCCATAgccagaaaagaaaagggaCAGATTTAGAAGAGTTAGAGGAGCAAAGTGAGAGAAGAAGAGACAGGATCAATGAGAAGATGAGGGCTTTGCAACAACTCATACCTCATAGTAACAAGACAGACAAAGCATCGATGCTAGATAAGGTCATAGAATATCTGAAATTGCTTCAGTTTCAGCTTCAGGTAATGTGTATGGGAGCTGGAATGACACCAGTAATGCCGTTGAACGCATTTAGATATGATCCCGGCCGGTTGGTACAACACAGTCAAACAATGATTCAACCTAGTAATACTGATGATGTAGTTGGTGGCAAGATGGGTAAGCCACTTTaa 885 0.3944 MKNSVPPCNFQSNNSFTSQKNPMGQDQEIVELLWQNGQVVLNSQTHKKPVLRTNNGSYGNNLSNLFQEDETVSWIDQYPLEDPLERELCSSFLPDKPTPRFHFPDSSHQKNNDFSQNVLNFAQNREVSRISAEEPETFRDDGIQRTCPKGEKGKSQTHETTVTSSSGASGSSLRKTCCRSTRIHSQKRKGTDLEELEEQSERRRDRINEKMRALQQLIPHSNKTDKASMLDKVIEYLKLLQFQLQVMCMGAGMTPVMPLNAFRYDPGRLVQHSQTMIQPSNTDDVVGGKMGKPL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3958 294 MobiDBLite consensus disorder prediction 131 156 - -
Sto5g3958 294 SMART finulus 198 246 IPR011598 GO:0046983
Sto5g3958 294 MobiDBLite consensus disorder prediction 157 179 - -
Sto5g3958 294 Coils Coil 193 217 - -
Sto5g3958 294 Gene3D - 194 247 IPR036638 GO:0046983
Sto5g3958 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Sto5g3958 294 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 186 258 IPR031066 -
Sto5g3958 294 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 9 201 IPR031066 -
Sto5g3958 294 PANTHER TRANSCRIPTION FACTOR PIF5 9 201 - -
Sto5g3958 294 PANTHER TRANSCRIPTION FACTOR PIF5 186 258 - -
Sto5g3958 294 MobiDBLite consensus disorder prediction 131 202 - -
Sto5g3958 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 253 IPR036638 GO:0046983
Sto5g3958 294 MobiDBLite consensus disorder prediction 185 202 - -
Sto5g3958 294 Pfam Helix-loop-helix DNA-binding domain 202 241 IPR011598 GO:0046983
Sto5g3958 294 MobiDBLite consensus disorder prediction 1 22 - -
Sto5g3958 294 CDD bHLH_AtPIF_like 179 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3958 Sto-Chr5 48299708 48303146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3958 23 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 31.511 6.46e-24 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto5g3958 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3958 K16189 - gmx:100811777 192.971