Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3953 ATGGCGACGCAGCACAGAGGCCCATCCCCTCAGTGCAGCCGAGGTCAGCCCAAGAGGCATCTTCTTACTACCGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAATTGCTCTTGGGTATCCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCATCAGTTCTGTCAAGCGATAGCATGCATATAGGTCTTCTTGCTGCTGCAGCTCATGCCGCTGCCACAAATAGCCGCTTTACTATATTCTACAACCCAAGGGCAAGCCCTTCAGAATTTGTCATTCCCTTGGCCAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACTGAAGAATCAAGTGTCCGCCGGTACATGGGTACTATAACAGGCATTAGTGACTTGGATCCTGTTCGTTGGCCTAACTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCTGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCATTGACAACATTCCCTATGTATCCGTCCCCATTCCCACTGAGGTTGAAACGCCCTTGGCCGTCGGGACTACCTTCTTTCCATGGTCTCAAGGATGGTGACATGAGCTTTAGTTCTCCATTCATGTGGCTCCAAGGTGGTCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGACTTGGGGTGACACCATGGATGCAGCCAAGACTTGATGCATCTATATCAGGTCTCCAGCCAGAGATATACCAAGCAATGGCTGCCGCTGCACTTCAGGAAGTGAGGGCAATGGATCCATCTAAATCTTCTCCGCAACCTATGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTATTTCTGGTATACAGAGGCAAGTGTTACAGCAGTCCCACTCTCACAACACCCTTTCGCAGAACTTTCAAGAAAACCAGATTCCTGTTCAGTCTCCACTCATGCAACGACAGTTGCAGCGTTACCATCCATATAATGATCAAaggcagcagcagcagcaactTAACAATTTACCTGTTCAGCAGCAGATCCCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGCTACCCAGTCTCACTCTCCATCCATGCAAGCCGTAGTTTCAACAAATTGCCAGCAGCAGACTTTTCCTGAACCTGTCAGGAACCAAATTTCCAGCTCTGATGTTTCTCCTATCCACAGTCTATTAGGATCATTTTCCCAGGATGGAGCATCCCAGTTACTGAACTTAAATGGATCCAATTCTGTGGTCTCTCCCACTTCCTTACTACCCAAGCAAATATCTGTTGAACCTCAGCTTCAATCTGCTGCTGCTGCTCAATGTGTATTGCCCCAGGTGGAAAACATGGGCACACCACAATCAAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCATCATACCAAGGTGCTGCTGATCCTCAGAGCAGTCTTTTGTTTGGTGTTAACATTGATCCATCTCTTATGTTACAAAATGGCATGCCAAACCTGCGAAATGTTGGCAATGAGAATGATTCGCTGTCGATGCCATTTTCTTCAAACTTTGCTGGTGCTACAGGGACTGATTTTCCACCAAGTTCAGACATGACAACATCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACAGCATCTCGAACCTTTGTCAAGGTTCACATGTCAGGGTGCTTTGGCAGGTCACTGGACATCTCTAAGTTCAGCAGCTATGATGAACTGCGCAGTGAGCTTGCCCGTATGTTTGGCCTTGAAGGCCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTCCTTGGCGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGGCTCCACATGAAGTGCAACAAATGGGCAAAGAAGGTCTTGCTTCTGCTACTTCTGCACCTGGTCACAAGCTTTCTGCTACTGGCAACAACACTTGCGATAACTACGTGAGTCGACAAGATTTGCGAAGTTCGAGCAATGGCATTGCATCAATGGGGTCTCTTGACTACTGA 2166 0.4635 MATQHRGPSPQCSRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPSGLPSFHGLKDGDMSFSSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASISGLQPEIYQAMAAAALQEVRAMDPSKSSPQPMLQFQQSSNVPISGIQRQVLQQSHSHNTLSQNFQENQIPVQSPLMQRQLQRYHPYNDQRQQQQQLNNLPVQQQIPNVISPLSNFASATQSHSPSMQAVVSTNCQQQTFPEPVRNQISSSDVSPIHSLLGSFSQDGASQLLNLNGSNSVVSPTSLLPKQISVEPQLQSAAAAQCVLPQVENMGTPQSNVSELPILPPFPGREYSSYQGAADPQSSLLFGVNIDPSLMLQNGMPNLRNVGNENDSLSMPFSSNFAGATGTDFPPSSDMTTSSCVDESGFLQSSENVDQANTASRTFVKVHMSGCFGRSLDISKFSSYDELRSELARMFGLEGQLENPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILAPHEVQQMGKEGLASATSAPGHKLSATGNNTCDNYVSRQDLRSSSNGIASMGSLDY 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3953 721 CDD B3_DNA 14 57 IPR003340 GO:0003677
Sto5g3953 721 MobiDBLite consensus disorder prediction 676 695 - -
Sto5g3953 721 SUPERFAMILY CAD & PB1 domains 580 659 - -
Sto5g3953 721 ProSiteProfiles B3 DNA-binding domain profile. 1 59 IPR003340 GO:0003677
Sto5g3953 721 SUPERFAMILY DNA-binding pseudobarrel domain 14 86 IPR015300 -
Sto5g3953 721 Pfam AUX/IAA family 574 670 IPR033389 -
Sto5g3953 721 ProSiteProfiles PB1 domain profile. 585 672 IPR000270 GO:0005515
Sto5g3953 721 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 697 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto5g3953 721 Pfam Auxin response factor 83 166 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto5g3953 721 Gene3D - 580 674 - -
Sto5g3953 721 PANTHER AUXIN RESPONSE FACTOR 6 14 697 - -
Sto5g3953 721 Pfam B3 DNA binding domain 14 58 IPR003340 GO:0003677
Sto5g3953 721 Gene3D - 121 193 - -
Sto5g3953 721 Gene3D - 9 58 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3953 Sto-Chr5 48243108 48249191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3953 14 685 B3 DNA Binding Superfamily AT5G37020 50.960 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto5g3953 AUX_IAA 4.4e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3953 - - gmx:100810798 1147.11