LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g3935	ATGATTACTACAATCTTGCGACGATCCTCTTCCCTTGTCTCAAGGCGTACTCTCGCCGCCTCCACGTTGATCGAGTCGGTTCTGCATCACCAACAACACCTCAGCTCATCCGCCGCCGGGTATGGTGTGTTTGGTGGCTGTGAGAGTCGGTTGTTATCCGGCTTGTCAGGTCCCGGTGGATTCAAGTCTAGAGCCTTCCACGCACAAGCGGGGCCGTTGAATTTCCGGGCGTCATTGGTTTCTCATGCGGAGTTTGCTGTAGATGATTACCCTCTTGAAGAAGGATCTAAAGGAAGCAATGATGAAGGTCTTGAGATAGCGAAGCTTGGGATTTCTCAGGATATTGTGTCTGCTTTGGCTAAGAAAGGTATAACGAAGCTCTTTCCGATACAGAGAGCTGTTCTGGAACCTGCGATGCAAGGGCGTGATATGATCGGTCGAGCTAGAACAGGAACTGGGAAAACACTTGCTTTTGGGATACCCATCATGGATAAGATCATTCGGTTTAATGCTAAGCATGGTCGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCACCAACTAGGGAACTTGCTCGGCAGGTTGAGAAGGAATTCTATGAGTCAGCACCCAATTTGGATACTATTTGTGTTTATGGAGGTACACCCATTTCGCAACAAATGAGGCAGCTCGACTATGGAGTTGATATCGCAGTAGGCACGCCTGGTCGAATCATTGATCTTCTTAACAGAGGTGCTCTAAATTTGAAGGACGTTCAGTTTGTTGTTCTTGATGAAGCAGATCAGATGCTTCAAGTTGGCTTTCAGGAAGATGTTGAGAAAATCTTGGAGAGGTTGCCTCCAAAACGTCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGCTTACCCGCAACTACCTAAAAGACCCAGTAACCATTGATCTTGTTGGAGATTCTGATCAGAAATTGGCAGATGGAATTACGCTATACTCAATTGCATCAGATATGTATGGAAAAGCGGGAATAATTGGATCTCTAATAACAGAACATGCGAAAGGAGGAAAATGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATGCCATGGCAAACACCCTAAGGTGTGAGGCCTTGCATGGAGATATTTCACAATCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAGAAGGCAATTTCAATGTTTTAGTAGCTACTGATGTTGCTTCACGTGGACTTGATATACCAAATGTTGATCTTGTAATACATTATGATCTTCCCAATAATTCAGAGATTTTTGTTCATCGATCAGGACGAACAGGTCGAGCTGGGAAGAAAGGAACTGCTATTCTTATTTATACTCAAGATCAAACCAGGGCCGTTAAGATGATTGAGCGTGATGTAGGATCCAGATTTTCGGAGGTAATTGCTTTTCCTTTTAAGCCTTGGGGCTGTGCCCTTGGGGACACTCTTGGATGTTTTGGGAATGTTAACTATGCTGATGTTAAGGTGAATTCTGTGAACTTTTTACTTGTGAATTTGTCAATAACTTCAAATGAACAGCAGGagttaaaaaaaggaaaaattgtagtaaACAAGAAGCAGGTTTTGCTACCAAGAATTGAAGGTGGATCAGTAGACATGTATGGCATGGGTGGTGGTCGATTTGGTTCTTCTGGAGGTATGCGGGGTCGTTCTGGTGATTCAGGTTTTGGCCGTAGTTCTGGATTTGGCCGCTCCAGCTTTGGTAATTCTGGTCGTTATGGTGGATCAAGCCAATCAGGTAGTGGATTTGGGGGATCCTTCGGTAACTCTTCTGGTGACTTGGGTGGATTTGGTGGACCAAGCTCTGGTCGTTATGGTTCTGGTGGCTCCGGATTTGGCAAATCTGGCGCAGACCGAGCAGGAGGATTTGGATTTAGTCGAtcaggtggtggtggtggtggatttGGTGGCTCAGGTCAATCTAGTGGATTTGGTGAAAGAAGTTCAAGCCAAAGAAGTAACATTGGTGATTCTCGTGGTAGTCGATTTGGTGGTTTTGGGGATGACCTGGATGGTCGAAACAATGGGAGAAGGTCCTTCTAA	2085	0.4412	MITTILRRSSSLVSRRTLAASTLIESVLHHQQHLSSSAAGYGVFGGCESRLLSGLSGPGGFKSRAFHAQAGPLNFRASLVSHAEFAVDDYPLEEGSKGSNDEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIRFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQLTRNYLKDPVTIDLVGDSDQKLADGITLYSIASDMYGKAGIIGSLITEHAKGGKCIVFTQTKRDADRLSYAMANTLRCEALHGDISQSQRERTLAGFREGNFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGTAILIYTQDQTRAVKMIERDVGSRFSEVIAFPFKPWGCALGDTLGCFGNVNYADVKVNSVNFLLVNLSITSNEQQELKKGKIVVNKKQVLLPRIEGGSVDMYGMGGGRFGSSGGMRGRSGDSGFGRSSGFGRSSFGNSGRYGGSSQSGSGFGGSFGNSSGDLGGFGGPSSGRYGSGGSGFGKSGADRAGGFGFSRSGGGGGGFGGSGQSSGFGERSSSQRSNIGDSRGSRFGGFGDDLDGRNNGRRSF	694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g3935	694	Gene3D	-	105	313	IPR027417	-
	Sto5g3935	694	Pfam	Helicase conserved C-terminal domain	338	443	IPR001650	-
	Sto5g3935	694	MobiDBLite	consensus disorder prediction	556	575	-	-
	Sto5g3935	694	Gene3D	-	324	477	IPR027417	-
	Sto5g3935	694	CDD	DEADc	115	310	-	-
	Sto5g3935	694	MobiDBLite	consensus disorder prediction	633	694	-	-
	Sto5g3935	694	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE	55	501	-	-
	Sto5g3935	694	CDD	SF2_C_DEAD	342	452	-	-
	Sto5g3935	694	SMART	helicmild6	363	443	IPR001650	-
	Sto5g3935	694	MobiDBLite	consensus disorder prediction	655	672	-	-
	Sto5g3935	694	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	135	309	IPR014001	-
	Sto5g3935	694	Pfam	DEAD/DEAH box helicase	128	296	IPR011545	GO:0003676\|GO:0005524
	Sto5g3935	694	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	338	483	IPR001650	-
	Sto5g3935	694	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	104	132	IPR014014	GO:0003724
	Sto5g3935	694	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	178	464	IPR027417	-
	Sto5g3935	694	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	55	501	-	-
	Sto5g3935	694	MobiDBLite	consensus disorder prediction	581	601	-	-
	Sto5g3935	694	SMART	ultradead3	123	326	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g3935	Sto-Chr5	48059560	48064511	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g3935	109	474	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.895	1.26e-67	226

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g3935	-		-	gmx:100778436	744.962