Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3927 ATGACTACCGTGCGCTATCACCAAAGCGTTTCTGAACAACCTGAAGACAACGTTGTTGAAACCTTCAGAAATCTTGAATTCCTATTCGAGTCCCTCAGCACAGAAAGTTTTAATATCTATTTTTACGTACACTTGGTATACAGCGCCGAACCTAATCTTGATTTACTTCTTCCTATACCTGACGGACCTTTACTCTTCTCTTGTCACTCCATCACTTGTGAACAATTCTTTCAAGAAGGTCCGACTTTCCTTCACACAAATATATCCCGATCCATCCACTTGATTCCCTCTCATGTTTTTGAAGAGCAGATAATACCTATCATAATGGCCGACGCTCGAATCTTGTACGACGGGTATCGTCACTCTCATGTTGGTGATCATTCATCTGCTACATACCCTTTGGCTATCGATGTTAGCGTTGAATTTGTAGGAGAATCTGGTCAAGCTGAACTAGATGTACTTAGGGATGCTTGGCATCGTATATTACCTCGGGAGAATAATAAGCAAGAAGATCAATTGAGAATGACTCCTGCGGctcaaaaagttatttattttctctacAAAATGTATGATCTTGTTAAACATAACCCTCGTGTTGATAGTAGTTGTTGCATTTGTTTGGAAGAGTATGCTGATACTAAGGGGGCAAAAGTTGCAGACATGCCTTGCCGACATGTTTTTCACATAGATTGTATTGTTCGATGGCTTGAAACCAGTAGGTCATGTCCCTTGTGTCGATTTGAACTGCCcagatcacacaacaacaaccaCAAGTTCATTCAATTCAtccttgtttgtttgttttacaCTATGGTGCCTACCCTGCGCTATAACCAAAGCGTTTCTGGACAACCTGAAGACAATGTTGTTGAAATCTTCAGCAATCTTGAATTTTTATTCGAGTCTCTCAGCACAGAAAGTTTTAATATCTATTTTTACGTACACTTGGTATACAGCGCCGAACCTAATCTTGATTTACTTCTTCCCATACCTGACGGACCTTTACTCTTCTCTTGTCACTCCATCACTTGTGAACAATTCTTTCAAGAAGGTCCGACTTTCCTTCACACAAACATATCCCGATCCATCCACTTGATTCCCTCTCATGTTCTTGAAGAGCAGATAATACCTACCATAATGACCGACGCTCGAATCTTGTACGACAGGTATCGTCACTCTCATGTTGGTGATCATTCCTCTGCTACATACCCTTTGGCTATCGATGTTAGTGTTGAATTTGTAGGGGAATCTGGTCAAGCTGAATTAGATGTACTTTGGGATGCTTGGCATCATATATTACCTCGCGAGAATAATAGGCAAGAAGATCAATTGAGAATAACCCCTGCATCTCAAAAAGCTATTGATTGTCTTCACACAATGAATCATGATGTTAAACATAACCCTTGTGTTGATAGTAGTTGTTGCATTTGTTTGCAAGAGTATGTTGATGATAAGGGGGTGGAAGTTTCAGCCATGCCTTGCCGACATGTTTATCACAAAGATTGTATTGTTCGATGGCTTAAAACCAGTAATTCATGTCCATTGTGTCGATTTCAAATGCCCATATCAACCAACAACAACCTCGTTGTTTGGGCGGGGATTAGACTAAGTGAGTTGTTGGTGAATAATAGTGATGAGTCATCTTCTTTATCTCTTTTTCCTCCCTAA 1668 0.3891 MTTVRYHQSVSEQPEDNVVETFRNLEFLFESLSTESFNIYFYVHLVYSAEPNLDLLLPIPDGPLLFSCHSITCEQFFQEGPTFLHTNISRSIHLIPSHVFEEQIIPIIMADARILYDGYRHSHVGDHSSATYPLAIDVSVEFVGESGQAELDVLRDAWHRILPRENNKQEDQLRMTPAAQKVIYFLYKMYDLVKHNPRVDSSCCICLEEYADTKGAKVADMPCRHVFHIDCIVRWLETSRSCPLCRFELPRSHNNNHKFIQFILVCLFYTMVPTLRYNQSVSGQPEDNVVEIFSNLEFLFESLSTESFNIYFYVHLVYSAEPNLDLLLPIPDGPLLFSCHSITCEQFFQEGPTFLHTNISRSIHLIPSHVLEEQIIPTIMTDARILYDRYRHSHVGDHSSATYPLAIDVSVEFVGESGQAELDVLWDAWHHILPRENNRQEDQLRITPASQKAIDCLHTMNHDVKHNPCVDSSCCICLQEYVDDKGVEVSAMPCRHVYHKDCIVRWLKTSNSCPLCRFQMPISTNNNLVVWAGIRLSELLVNNSDESSSLSLFPP 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3927 555 SUPERFAMILY RING/U-box 473 525 - -
Sto5g3927 555 Pfam Ring finger domain 202 246 IPR001841 -
Sto5g3927 555 Pfam Ring finger domain 473 517 IPR001841 -
Sto5g3927 555 PANTHER F6A14.12 PROTEIN-RELATED 167 251 - -
Sto5g3927 555 PANTHER F6A14.12 PROTEIN-RELATED 424 521 - -
Sto5g3927 555 SMART ring_2 203 245 IPR001841 -
Sto5g3927 555 SMART ring_2 474 516 IPR001841 -
Sto5g3927 555 SMART ringv_2 473 517 IPR011016 GO:0008270
Sto5g3927 555 SMART ringv_2 202 246 IPR011016 GO:0008270
Sto5g3927 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 523 IPR013083 -
Sto5g3927 555 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 252 IPR013083 -
Sto5g3927 555 ProSiteProfiles Zinc finger RING-type profile. 203 246 IPR001841 -
Sto5g3927 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 167 251 - -
Sto5g3927 555 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 424 521 - -
Sto5g3927 555 SUPERFAMILY RING/U-box 202 253 - -
Sto5g3927 555 ProSiteProfiles Zinc finger RING-type profile. 474 517 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3927 Sto-Chr5 47943463 47948313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3927 435 521 C3H Transcription Factor Family AT1G18760 29.885 1.24e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3927 - K11982 aprc:113870408 88.9669