Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3914 ATGGCTTTCTTCAGGAACTTTTCAAATGAAACGGTTTCTCATAGTGTCCTGGAAGAGAAAGACCAAGGACAACATCCTGATAGAATCCGCAAATCAATTGGTAATGAATGTGTTGATGCATCTTCAAGTGAGAAGGAATTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGGTGTTAGTAGGCTGCAAAATGAGGCTGCAGGTGATGATGGAGTTGGTATGAGAGAGTCTAACTTACAGTGTAGTGGAAGTAAAACAGCTATGGCTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAGCCTATATGCCAACAGAATGGGACTGAATACGGGCGGGAATCACAAAGTGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCGGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGACAAAAGGAATCAGGAAAAGGTCCAAGAGGCCATTCTGATGTACCTGCCGAGGAGATGTTGTCTGATGAATATTATGAGCAAGAAGAACAAAGTGACTCCGTGCATTACAGGGGGGTTCATCAATCCACTGGATCAAATTCTTGGCCTCAACGGATGTCTACTGCTGCCAACAGCCGTGGGAATAGAAATTCCAGGATTTCCAACGttgttgaagatgaagatggtgaTAATGacaatgatgatggtgatgctGAtgggCAATTCCTTGCAGAAGATGATCCTGACGATGCAGACTTTGAGCCTGTCACAAGTGGTCGTTCTGCAAATAAGGATAAAGATTGGGAAGGTGAAGACtcagatgaagatgatgaaagtGATGAGAATGTAGATGtttcagatgatgatgatacttACTATGCAAGAAAACCTTCAGGAAGGCAACGTGGTAAAGTTGGTAGAAGTGTAAAACCTACCAGAGAACGCAAATCATATACTGCATCTGGTAGACAAAGAAGAGTTAAAACATCTTTTGAAGAGGACGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTTAAAAGCATGAAAAAGAGGGGTGCAAATGCGCGCAAAAATAATGGTCGATCTTCTGCAACTGCAAGTTTTTCTGGGAGGAACTGTGAGGTTCGCACATCTAGTAGAACTGTTAGGAAGAAGGTATCGTATGTTGAAAGTGAAGAAAGTGAAGAAGCTgatgaagggaagaagaaaaagccTCAAAAAgaagaaattgaagaggaGGACGGTGACTCCATCGAAAAGGTACTTTGGCATCAGCCCAAGGGCATGGCTGATGAGGCACAGAGGAATAATAGATCAACGGAGCCTGTTTTATGGAGTCACTTGTTTGATTCTGAACCTGATTGGAATGAGATGGAATTCTTAATAAAATGGAAGGGCCAGTCACATTTGCACTGTCAGTGGAAGCCATTTTCTGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTAAATTATACAAAGAAAGTGACAGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGACATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAAAGATAGTTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTGTCTTATGCTGAAGTGACATGGGAGAAGGACATAGATATTGCTTTTGCTCAACATGCTATTGATGAGTACAAGGCTCGTGAGGCTACATTAGCAGTTCAAGGAAAGACAGTAGATACCCAGCGTAAGAAGAGCAAAGCAAGTTTGAGAAAGCTTGATGAACAGCCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTCCTTGTTAACAGTTGGAGAAATGACACAAACGTCATTTTAGCTGATGAGATGGGTCTTGGTAAAACTGTACAATCAGTGTCAATGCTTGGTTTTCTTCAGAATGCCCAGCAGATCTACGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGAAAGTGGCTTCCTGACATGAATGTTATTGTATATGTTGGTAACCGCGCAGGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAGGCTGGCAGGCCTATAAAATTTAATGCACTGTTGACTACATATGAAGTAGTTCTGAAGGATAAAGCTTTTCTCTCCAAGATCAAGTGGAGTTATCTGATGGTCGATGAGGCTCATAGGCTGAAAAATAGTGAGGCACAGTTGTACACGACACTTTCAGAATTTAGCACCAAGAACAAATTGCTTGTCACTGGTACTCCACTACAGAACAGTGTTGAAGAGCTATGGGCCTTGCTTCACTTTCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTTAGTTCATTCAATGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGACCTCACATACTCCGAAGAGTCATCAAAGATGTTGAGAAATCATTGCCCCCAAAAATTGAGCGTATCCTTAGAGTTGAAATGTCTCCTCTTCAGAAGCAGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGCGGGAATCAGGTTTCTCTTCTGAATATTGTGGTAGAATTAAAGAAATGCTGCAACCATCCCTTCCTTTTTGAAAGTGCTGACCATGGTTATGGAGGGGACGCAGCAAGTAGTGATAGCAGCAAACTCGAGCGAATCGTGTTTAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGCTGAGTATATGTCACTTAGAGGGTTTCAATTCCAGAGGCTGGATGGCAGTACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCAGGCAGTGATGATTTTTGTTTCCTTCTTTCAACACGTGCAGGAGGTCTGGGTATCAACCTTGCCACAGCGGACACTGTCATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCTATGAGTAGAGCTCATAGAATTGGTCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGAGCTAAGAAGAAGATGGTTCTCGACCATTTGgtgattcaaaaattaaatgcaGAGGGAAGGTTAGAGAAGAAAGAAGCCAAAAAAGGAGGTCTTTTTGACAAAAATGAACTGTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTttttaaggaagaaagaaatgATGAAGAAAGTAAGAAACGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCTGAGAAGGTTGAAGAGAAGGAACCTGAAGGAGAGCAAGGGAACGAGTTATTAAGTGCCTTTAAGGTTGCTAATTTCTGCAATGATGTAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGATGCAGTAGCCCAAGCTGAAGAAGCTCTGGCCCCACGTGCTGCGCGGAATATTAAAAGCTATGCAGAGGCCAATCAATCTGAAAGaagtaataaaagaaaaaagaaagaacccGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGCTCCAGCAACACCGATGATTGAGGGAGCAACCGCTCAAGTGAGAAGTTGGTCATATGGGAATGTGTCTAAAAGAGATGCACTACGTTTTTCTCGTGCtGTTATGAAATTTGGAAATGAGAGCCAAATCCACTTAATAGCTGCTGAGGTCGGTGGTGCATTTGGAGCAGCTCCACCTGAAGCCCAAATTGAACTCTTCAATTCTCTGATTGATGGCTGTAAAGAAGCCATGGAACTTGAAAGTATGGACCCAAAGGGGCCACTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATATGCTTAACCGTGTTCAAGAACTACAGCTCTTGGCAAAGCGCATAAGTCGATATGAAGATCCCATCTCACAATTTCGTGTTTTAACATATCTTAAACCTTCAAACTGGTCTAAAGGATGTGGATGGAATCCACTTGATGATGCAAGATTGCTTCTCGGAATTCATTTCCATGGATTTGGCAATTGGGAAAAGATAAGATTGGATGAAAGACTTGGCCTAACGAAGAAAATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTACCACGAGCTCCAAATTTGAGGGACCGTGCTAATGCCCTTTTGGAACAAGAACTTGCGGTTCTTGGTGTAAAAACTGCCAATAGTAAAGTGGGACGTAAGGCTTCCAAGAAGGAGAAAGAACATCCTTTGAACATTCCAGTGTCTCGTGGGCAGGAGAAGAAAAAATTTGGCTCCACTAAAGTTAATGTGCAAATGAGAAAGGATAGATCCCTGAGACCCCAGAGGATTGAACCTATAGTAAAAGAAGAGGGTGAAATGTCTGACAATGATGAAGTTTATGAGCAATTCAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTTATGGTTGAGGAAATGAAAACCTTGAAACGTCTTCACAGGTTGCAGACTACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGAAACTACTTACAGCTTCTTGGGCGAAGGATTGATCAAATTGTGTTGGACCATGAAGAGGAACTCTATAAGCAAGATAGGATGACTACGCGATTGTGGAACTATGTCTCAACCTTCTCCCATCTATCGGGGGAGAGGCTACATCAAATCTATTCCAAACTTAAACAGGAGCAAGAAGATGAGGCAGGGGTTGGCCCCTCTCATATGAACGGATCAATGTCTGGTCCATTTTCCAGACATGGCCACCTTAATTCATTCCCCCGCCATATGGATAGACAAAGAGGATACAAAAATGTGGGTACCTACCAAATGCCGGAACCAGTTCATAACACAGGGAAATCCGAGGCTTGGAAACGAAGGAGGAGAGTTGAAGGTGATGGTCATTTCCAAGGTCAGCCACCACCTCAAAGAACAATGGGTAATGGGATTCAAATATCTGATCCTAACTCACTGGGGATACTTGGGGCCGGACCGTCTGATAGACGATTTGTTAGTGAAAAACCTGAAAAACCTTATAGGACGCGACCTGGTGGAGTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAG 5283 0.4058 MAFFRNFSNETVSHSVLEEKDQGQHPDRIRKSIGNECVDASSSEKEFDMNMDAQYHSDGEPDGVSRLQNEAAGDDGVGMRESNLQCSGSKTAMAGRWGSTFWKDCQPICQQNGTEYGRESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKESGKGPRGHSDVPAEEMLSDEYYEQEEQSDSVHYRGVHQSTGSNSWPQRMSTAANSRGNRNSRISNVVEDEDGDNDNDDGDADGQFLAEDDPDDADFEPVTSGRSANKDKDWEGEDSDEDDESDENVDVSDDDDTYYARKPSGRQRGKVGRSVKPTRERKSYTASGRQRRVKTSFEEDESTAEDSESESDDDFKSMKKRGANARKNNGRSSATASFSGRNCEVRTSSRTVRKKVSYVESEESEEADEGKKKKPQKEEIEEEDGDSIEKVLWHQPKGMADEAQRNNRSTEPVLWSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKPFSELQNLSGFKKVLNYTKKVTEDIRYRNTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDSSGNVIPEYLVKWQGLSYAEVTWEKDIDIAFAQHAIDEYKAREATLAVQGKTVDTQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIYGPFLVVVPLSTLSNWAKEFRKWLPDMNVIVYVGNRAGREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKAFLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDAASSDSSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEPEGEQGNELLSAFKVANFCNDVDDGSFWSRWIKPDAVAQAEEALAPRAARNIKSYAEANQSERSNKRKKKEPEPSERVQKRRKAEYSAPATPMIEGATAQVRSWSYGNVSKRDALRFSRAVMKFGNESQIHLIAAEVGGAFGAAPPEAQIELFNSLIDGCKEAMELESMDPKGPLLDFFGVPVKANDMLNRVQELQLLAKRISRYEDPISQFRVLTYLKPSNWSKGCGWNPLDDARLLLGIHFHGFGNWEKIRLDERLGLTKKIAPVELHHHETFLPRAPNLRDRANALLEQELAVLGVKTANSKVGRKASKKEKEHPLNIPVSRGQEKKKFGSTKVNVQMRKDRSLRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLDHEEELYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQEDEAGVGPSHMNGSMSGPFSRHGHLNSFPRHMDRQRGYKNVGTYQMPEPVHNTGKSEAWKRRRRVEGDGHFQGQPPPQRTMGNGIQISDPNSLGILGAGPSDRRFVSEKPEKPYRTRPGGVPSRQGFSSGIK 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3914 1760 MobiDBLite consensus disorder prediction 53 82 - -
Sto5g3914 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 417 496 IPR000953 -
Sto5g3914 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 110 1674 - -
Sto5g3914 1760 SMART chromo_7 528 587 IPR000953 -
Sto5g3914 1760 SMART chromo_7 415 498 IPR000953 -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 131 169 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 304 331 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 114 420 - -
Sto5g3914 1760 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 942 1093 IPR001650 -
Sto5g3914 1760 CDD CD1_tandem 415 495 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 1695 1760 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 1704 1718 - -
Sto5g3914 1760 Gene3D - 613 852 IPR038718 -
Sto5g3914 1760 Gene3D - 1348 1461 - -
Sto5g3914 1760 Pfam Domain of unknown function (DUF4208) 1531 1623 IPR025260 -
Sto5g3914 1760 Pfam SNF2-related domain 641 910 IPR000330 GO:0005524|GO:0140658
Sto5g3914 1760 Gene3D - 853 1083 IPR027417 -
Sto5g3914 1760 SMART ultradead3 618 817 IPR014001 -
Sto5g3914 1760 Coils Coil 1135 1155 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 358 377 - -
Sto5g3914 1760 SUPERFAMILY Chromo domain-like 414 497 IPR016197 -
Sto5g3914 1760 SMART DUF4208_2 1519 1624 IPR025260 -
Sto5g3914 1760 SUPERFAMILY Chromo domain-like 509 585 IPR016197 -
Sto5g3914 1760 SMART helicmild6 968 1052 IPR001650 -
Sto5g3914 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 846 1126 IPR027417 -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 224 249 - -
Sto5g3914 1760 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 806 IPR014001 -
Sto5g3914 1760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 843 IPR027417 -
Sto5g3914 1760 ProSiteProfiles Chromo and chromo shadow domain profile. 530 594 IPR000953 -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 187 216 - -
Sto5g3914 1760 CDD CD2_tandem 528 584 - -
Sto5g3914 1760 Coils Coil 1082 1102 - -
Sto5g3914 1760 CDD SF2_C_SNF 928 1063 - -
Sto5g3914 1760 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 110 1674 - -
Sto5g3914 1760 Gene3D - 532 584 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 1211 1243 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 378 420 - -
Sto5g3914 1760 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 752 761 IPR002464 -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 266 284 - -
Sto5g3914 1760 Pfam Helicase conserved C-terminal domain 939 1052 IPR001650 -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 114 130 - -
Sto5g3914 1760 Pfam Chromo (CHRromatin Organisation MOdifier) domain 531 585 IPR023780 -
Sto5g3914 1760 Gene3D - 403 530 - -
Sto5g3914 1760 MobiDBLite consensus disorder prediction 1216 1240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3914 Sto-Chr5 47783715 47799473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3914 644 1079 RAD5 or RAD16-like Gene Family AT1G02670 25.743 2.68e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto5g3914 SNF2_N 6.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3914 K11367 - gmx:100808039 2829.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g3914 5 47783715 47799473 Sto5g3914 5 47783715 47799473 ECH