Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3898 ATGTCGCGGACTGATAGAATGACTTCGGATCTTAACAAAACTGGTCCAGTGGAAAGAGACACTGAACAGGCCATTACTGCCTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGTCCCTTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTCAGCCACGTCTCAAGAATTATCTCTGGACAACGCACACCAATCTTTCAAAGATACCCACGGCCTGAGAAGGAATACCAGTCATTTTCTCTTATATACAATGATAGGTCGCTGGACTTGaTTTGCAAGGATAAAGATGAGGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATATCACGTAGCCATCACAGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTAATGAAAGTTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATATGAGAGTCCCCCTAAGAATGGTTTGGATAAAGCTTTATCTGATGTGATTTTGTATGCTGTTCCCCCAAAGGGATTCTTCCCTCCAGATTCTGCTAGTGCTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTGTACATGGTCACATGAAGACAGTTCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTCAGCTCATCCAGCCAAGGTTCTGGTCATGATGATGGTGATGCATTAGGGGACGTTTTCATTTGGGGGGAAGGCACAGGTGATGGAGTTCTAGGTGGTGGGGCTCACCGAGTTGGTAGTTCTTTTGCTGTAAAAATGGATTCTTTATTGCCCAAAGCGTTGGAATCTGCAGTAGTACTTGATGTGCAGAATATTGCTTGTGGTGGACGGCATGCAGCCTTAGTGACTAAGCAAGGGGAAATTTTCTCCTGGGGTGAGGAATCAGGAGGTAGGCTTGGGCATGGCGTTGACTCTGATGTTCTCCATCCAAAGCTTGTAGAAGCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGTGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGGGATGGAACATACAATTACGGCCTTCTAGGGCATGGAAATCAAGTGAGCCATTGGGTCCCAAAAAGAGTAAATGGACCCTTGGAGGGAATGCATGTTTCATCTATATCTTGTGGACCATGGCATACTGCTGTCGTAACCTCTTCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTAGGACATGGTGACCGAAAAAGTGTTTCAATACCAAGGGAAGTAGAGTCCCTTAAGGGACTTCGTACTGTGCGTGCTGCTTGTGGTGTTTGGCATACAGCTGCTGTAGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGTAATTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCAAAACTTGTTCCTACTTGTGTTGCAGCTCTTGTTGAGCCCAACTTTTGTCAGGTTGCATGTGGGCATAGTCTGACTGTTGCACTTACTACCTCAGGCCATGTCTATACAATGGGCAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGTTGATGGGAAACAACCAGCACGAGTTGAAGGAAAGCTCTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAGGTTTACACATGGGGGAAGGGTGCCAATGGACGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCGACATTAGTAGAAGCTCTAAAAGATAAACAAGTCAAATGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTTCATAAATGGGTCTCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTCtgccttttaattttaaaagaaaacgtCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAATCTCTGAAGGCTTCAATGGCACCAAACCCTAACAAACCTTATCGTGTTTGTGATAATTGTTTCAATAAACTAAGAAAAACTATTGAAAGTGATTCTTCATCTCATTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGGCCACTGGAGTTTATTGATAAGGATGATAAGTTGGATTCGAGATCTCGTAATCAACTAGCAAGATTCTCCTCAATGGAATCATTGAAACAAGTGGAAAGCAGGTCTtcaaagaaaaacaagaaattGGAATTCAACAGTAGTCGTGTGTCACCTGCTCCAAATGGAGGTTCCCAGTGGGGAGCACTTAATATTTCCAAGTCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGGATTGTTTCTCGAGCAACATCTCCAATATCTAGACGGCCCAGTCCACCTCGTTCAACTACTCCAACCCCAACATTGGGTGGACTTACCTCCCCAAAGATAGTGGTGGATGATGCTAAGAGGACAAATGATAGCCTCAGCCAGGAGGTTATTAAATTAAGAGCACAGGTTGAAAATCTGACTCGCCAAGCTCAACTTCAAGAAATTGAACTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCAATCGCTGGAGAAGAAACTGCTAAATGTAAAGCAGCAAAGGAAGTGATCAAGTCCCTTACTGCTCAGTTGAAGGAAATGGCTGAGAGGCTACCAGTAGGAGCAGCAAGGAATGTCAGATCACCTTCTCTTACTTCCTTTGGTTCAAGTCCTGGTTCCAACGAAGTCAGCAATGCTTCTGTTGAGCGATTGAGTATTCAAGCTACTAGCCTAGAACCGGACTTGACGGGATCAAACAATCAGTTACTTTCAAATGGATCAAGCACCATCGGTAACCGTACAGCTGAAAGTGAATCTCGTAACGAGACTGAATGGGTTGAGCAGGATGAGCCTGGTGTATATATTACACTCACCTCCCTACCAGGAGGCGTAATAGATCTGAAAAGAGTTCGCTTCAGTCGGAAGCGGTTTAGCGAGAAACAGGCAGAACAATGGTGGGCTGAGAATCGGGCGCGCGTGTACGAACAGTACAATGTGCGCATGATTGACAAGTCAACTGTTGGTGTTGGGAGTGAGGACCTGCCTCATTGA 3270 0.4346 MSRTDRMTSDLNKTGPVERDTEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASASVHSVSSGGSDSVHGHMKTVPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHRVGSSFAVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLVEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGMHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQVDGKQPARVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKQVKCIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKTIESDSSSHSSVSRRGSINQGPLEFIDKDDKLDSRSRNQLARFSSMESLKQVESRSSKKNKKLEFNSSRVSPAPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRAQVENLTRQAQLQEIELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARNVRSPSLTSFGSSPGSNEVSNASVERLSIQATSLEPDLTGSNNQLLSNGSSTIGNRTAESESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSTVGVGSEDLPH 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3898 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 423 433 IPR000408 -
Sto5g3898 1089 Gene3D - 19 137 IPR011993 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 143 173 - -
Sto5g3898 1089 Pfam Pleckstrin homology domain 22 128 IPR001849 -
Sto5g3898 1089 Coils Coil 923 943 - -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 553 604 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 381 433 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 436 485 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 552 601 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 500 549 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 606 653 IPR000408 -
Sto5g3898 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 330 378 IPR000408 -
Sto5g3898 1089 ProSiteProfiles BRX domain profile. 1016 1071 IPR013591 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 986 1009 - -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 329 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 313 326 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 332 348 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 382 398 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 423 439 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 439 453 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 542 560 IPR000408 -
Sto5g3898 1089 PRINTS Chromosome condensation regulator RCC1 signature 600 621 IPR000408 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 137 192 - -
Sto5g3898 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 475 485 IPR000408 -
Sto5g3898 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 730 IPR013083 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 986 1018 - -
Sto5g3898 1089 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1075 - -
Sto5g3898 1089 Pfam FYVE zinc finger 657 723 IPR000306 GO:0046872
Sto5g3898 1089 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 661 723 IPR017455 -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 605 656 IPR000408 -
Sto5g3898 1089 Pfam Transcription factor BRX N-terminal domain 918 950 IPR027988 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 790 804 - -
Sto5g3898 1089 SUPERFAMILY FYVE/PHD zinc finger 657 728 IPR011011 -
Sto5g3898 1089 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 21 1075 - -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 330 381 IPR000408 -
Sto5g3898 1089 CDD FYVE_like_SF 666 719 - -
Sto5g3898 1089 CDD PH_PLC_plant-like 19 129 - -
Sto5g3898 1089 Pfam Transcription factor regulating root and shoot growth via Pin3 1015 1070 IPR013591 -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 835 863 - -
Sto5g3898 1089 MobiDBLite consensus disorder prediction 953 973 - -
Sto5g3898 1089 SUPERFAMILY PH domain-like 20 128 - -
Sto5g3898 1089 SMART fyve_4 655 724 IPR000306 GO:0046872
Sto5g3898 1089 MobiDBLite consensus disorder prediction 729 804 - -
Sto5g3898 1089 Pfam Unstructured region between BRX_N and BRX domain 959 1008 - -
Sto5g3898 1089 Gene3D - 499 668 IPR009091 -
Sto5g3898 1089 Gene3D - 244 498 IPR009091 -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 437 488 IPR000408 -
Sto5g3898 1089 Coils Coil 867 908 - -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 501 552 IPR000408 -
Sto5g3898 1089 SUPERFAMILY RCC1/BLIP-II 267 658 IPR009091 -
Sto5g3898 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 382 436 IPR000408 -
Sto5g3898 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 316 326 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3898 Sto-Chr5 47534252 47543755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3898 927 1080 Major Intrinsic Protein MIP AT1G31880 34.091 1.23e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3898 - - tcc:18589999 1910.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g3898 5 47534252 47543755 Sto5g3898 5 47534252 47543755 ECH