Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g3897 ATGTTATCTTGTATGCTGACAAAGCTTGATAATGAGAAGAAAATTCAAGGTATTCGGTTTGCCAACAGGGGTCTTACTATTTCTCATCTGATGTATGCAGATGACACCATTATGTTCTTTAAAGCTACTCCTGAAGCTTGTAATCATGTCAATCAAGCCCTCAATATATACAGTAGGCTTGCAGGGCAGAGAATCAACAAGGACAAGAAAAGGTTGTTTCCTTCTAAGGAGAatgggggtttgggtttaagagaAACTGATAAGGTCAATAAGGCTTTAATTGCAAAGCAGACTTGGAGGATAATTGAGCATCCTAATTCTTTATATAGCAGATGGACTTCATCCAAGTATTTCAAGAGGAGCATTCGTTTCATTGAGACTTTGATAGCTGACACTGGAAATGACAAGTTGCTGGTTCTGGCAATGGTGGTGCTTAATAACATTTGGGAAGCGAGAAATAAGTTATATAtggaaggaaaaaggaaaaagattgAGTCGATTGTGCAGACTATCAGGATGCAGTGGCAGGAATATACCTCCCTTCATTCAGGGAACGCTAGATTAGATCTTGTTGCACTTATAGGTATTCTCATGCTCAGATTTGGGACATCAAGGAATGTGAGTTTAGCACCCTCTCGTGCTTTTGGTGGTAATGGGTCTCGCTTTTATCATGAGAAGCAAGTGAATAATAATTTCCCTCTCGTGCTTTTGCTCGATCACTTGCGGAGAGGAGGAGATTCACCGGGATTCATGACACTCATGGAAGTGGGTGAGAATGAGAGTTTGAATTGTGCAATGAAGGCATCCAAATCAGAGATTCTATGTTTGCATTGGCCTACAGGGTCACTGCAATCTCAATCTCATTCTTCCCTTGATGGTTTCAAATCAATGGAGGCAAACCATGAACTTCAATGGAGGATGGAAGAATCAAGCGAATTGCAACTGGAGGAGAATAAAGTTTCTAtggagaaaaataagaaaagaagacTCAAAACACCAACCCAGGTTATGGCCCTGGAAAACTTTTATGATGAGCACAAATATCCCACAGAAGAAATGAAATTAGAACTTGCTGAGGAGTTAGGCTTGACAGAAAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGCTAAAAGATAAAAGATTGTTGAAAGATGAAACGTGTGCTAATGGACGGCAGGATCGTTCAAGTGGTGGCATCCAGGAGCATGGAAGTGGACTTGGACAAGATTCATGTGGAAGCACTAAACATGGTGAATATAGGCATCTTGATCCGAAGGAGGTTGAGAGTCATGGCCTTTATGGTCATGACTTTTCTGCTGCAGATATGACCTATGAACATAGGAGCCACTATACTGAAAATGTTAGTGGGATGGATACGTCATCAGAGAGTAGTTCATCTTTACAAGATCAGTTTTCTCAAGGTCAGGATCCATATAATTTGGAGCCTTCTAGATATCTGACACCTAACAGAGGTCTGCCACCTTTAAATCCCAAAACTGCTATTAATATGGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAGAATGCTGCTATAACTGCTGTCAAGAAGCAATTAGGAAAGCATTATCAAGAAGAAGGTCCACTACTTGGTGTTGAATTTGACCCTGTTCCTCCAGGGGCATTTGAGTGTCAGAATGGATATCCGGTTCATGACTACTGTGAGTCTTACCTGTGTAATTTGATGAATTCTTTGGCAGAATCATTGCATGTTGCGAATCCTACTGTTCCCAGTCCTCCAGAAGTTTCTGCTGTGAAAAGGCAACCCAGTCTTAGCTCAAGGCATGATTCAAAATATAGTTCCCAAGATTCTCATATGGAAGTAGCTGATCTTGGATCCTTGCATGACACTGATTTCCAGGATAAGAAATCCCGCCAGCATACAAAGAATAAGCACACATTTCACAGTCATTTTCCTGGCAGGAACTCCTCCCTAGATTTGTATGAGGATTCTATTAGGGAAGCATCTGCTTACAATAGCAATAAGAATCATACAATGGGCACTAAGCATGAAGGGATGAGATCCGATTCTGCTTCTAACCATAGTGATCACTTTGAAGGAGACCTTACAGTTAAGCAGACAGAACAATTGCTGCATTGCTATGATTATGACAATGCAAAGAATGTTAAGAGGAGTGGACATGTAAAATCTAAGCCTTCAAACTCATTCCGTAATGCTCGCATTTCTGTTGATACAGAAGAAACAGGAGTATCTCCAAGGATAGCAAAGGAAGAGAAGTTTAATGGAGACAAAAAggcaagaaaaaaatattatgattcaGAAAGAATGAGGGTGCTTCCAAATGAAACCATGATTGCAAAACGACTCAAAGATGATCTTCCTAAAAAACACAGTGTGAAACACACACCTATTGCTGAGTTGCAACCTCGGAAAAACCAGAGGTCTGCAGCAGAGGTACCATCCAGCTTCAGCGAAGATGATGAAACTGCGGATACCAGTACGTCGCTGGATTAA 2508 0.3951 MLSCMLTKLDNEKKIQGIRFANRGLTISHLMYADDTIMFFKATPEACNHVNQALNIYSRLAGQRINKDKKRLFPSKENGGLGLRETDKVNKALIAKQTWRIIEHPNSLYSRWTSSKYFKRSIRFIETLIADTGNDKLLVLAMVVLNNIWEARNKLYMEGKRKKIESIVQTIRMQWQEYTSLHSGNARLDLVALIGILMLRFGTSRNVSLAPSRAFGGNGSRFYHEKQVNNNFPLVLLLDHLRRGGDSPGFMTLMEVGENESLNCAMKASKSEILCLHWPTGSLQSQSHSSLDGFKSMEANHELQWRMEESSELQLEENKVSMEKNKKRRLKTPTQVMALENFYDEHKYPTEEMKLELAEELGLTEKQVSGWFCHRRLKDKRLLKDETCANGRQDRSSGGIQEHGSGLGQDSCGSTKHGEYRHLDPKEVESHGLYGHDFSAADMTYEHRSHYTENVSGMDTSSESSSSLQDQFSQGQDPYNLEPSRYLTPNRGLPPLNPKTAINMGYKPSGYLKVKGEIENAAITAVKKQLGKHYQEEGPLLGVEFDPVPPGAFECQNGYPVHDYCESYLCNLMNSLAESLHVANPTVPSPPEVSAVKRQPSLSSRHDSKYSSQDSHMEVADLGSLHDTDFQDKKSRQHTKNKHTFHSHFPGRNSSLDLYEDSIREASAYNSNKNHTMGTKHEGMRSDSASNHSDHFEGDLTVKQTEQLLHCYDYDNAKNVKRSGHVKSKPSNSFRNARISVDTEETGVSPRIAKEEKFNGDKKARKKYYDSERMRVLPNETMIAKRLKDDLPKKHSVKHTPIAELQPRKNQRSAAEVPSSFSEDDETADTSTSLD 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g3897 835 Pfam Homeodomain 326 381 IPR001356 GO:0003677
Sto5g3897 835 MobiDBLite consensus disorder prediction 786 835 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 389 419 - -
Sto5g3897 835 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 307 835 - -
Sto5g3897 835 SUPERFAMILY Homeodomain-like 324 390 IPR009057 -
Sto5g3897 835 Gene3D - 316 398 - -
Sto5g3897 835 ProSiteProfiles 'Homeobox' domain profile. 322 382 IPR001356 GO:0003677
Sto5g3897 835 MobiDBLite consensus disorder prediction 631 651 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 392 412 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 786 802 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 585 616 - -
Sto5g3897 835 CDD homeodomain 326 381 IPR001356 GO:0003677
Sto5g3897 835 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 307 835 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 454 481 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 669 694 - -
Sto5g3897 835 MobiDBLite consensus disorder prediction 812 835 - -
Sto5g3897 835 SMART HOX_1 324 386 IPR001356 GO:0003677
Sto5g3897 835 MobiDBLite consensus disorder prediction 678 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g3897 Sto-Chr5 47500267 47517971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g3897 309 835 Homeobox Transcription Factor Family AT4G03250 38.165 2.80e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto5g3897 Homeodomain 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g3897 - - gmx:100805913 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g3897 5 47500267 47517971 Sto5g3897 5 47500267 47517971 ECH